Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1176 ATGGCTTCTCTGGCTCAGCAGCTGAGCGGCCTGAGATGGACGACCCCACTGCCCCCCTCAACGTCATCCTCATCATCATCATCATCGTCGTCGAGGCAGACCCACCACAAGCACCACCGCACTCGCACCGTGGTGTGTTCAGTGGCACTCTCCAATGCGCAGAACAGAGAGAGAATCAAGCTCAAAGAGCTCTTCCAAGAAGCCTACGAGCGCTGCCGCTCTGATCCCATGGAAGGCGTTTCCTTCACTCTTGAGCAGTTCACTGAGGCCCTCGACAAGTATGACTTCGATTCTGAGGTTGGCACCAAGATTAAGGGCACCGTATTTGGCACAGATGCCGGTGGAGCTTATGTTGATGTTACTGCAAAGTCCTCGGCATATTTGCCGCTGCAAGAGTCATGCATCCACAAAGTTAAGCACGTAGAAGGTGCAGGCATATTTCCTGGCTTGAGAGAGGAATTTGTAATCATTGGTGAAAATGAAGCTGATGATAGCTTGATCTTGAGTTTAAAGGCTGTCCAGTTTGACCTTGCATGGGAACGCTGTAGACAACTTCAAGCGGAAGATGTTGTGGTCAAGGGTAAGATTGTTAATGGAAACAAAGGTGGACTGGTGGCTGAAGTGGAAGGCTTAAAGGGGTTTGTTCCATTCTCACAAATATCAACGAAATTAACTGGAGAAGAGCTTCTTGAGAAAGAGCTTCCCCTAAAGTTTGTGGAGGTGGATGAGGAACAGTGCAGACTTATACTCAGTCACCGGAAAGCTGTGGCTGACAGCCAGGGACAGCTGGGAATTGGATCAGTAGTGATTGGCACTGTTCAAAGCATAAAACCATATGGTGCCTTCGTTGAGATTGGTGGAATCAGTGGTCTCCTTCATGTCAGTCAGATCAGTCATGATCGTATAACTGATATTGCAACTGTTCTTCAACCGGGTGATACTCTGAAGGTGATGATCTTAAGTCATGATCGGGAGAGAGGCCGAGTAAGTCTTTCCACGAAGAAGTTGGAACCTACACCTGGAGATATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCTATGGCACGTGCTGATATGCTTAGGTTCCAACCAGAGAGTGGATTAACTCTTAGCAGTGAGGGGATCTTAGGACCACTTGGTTCAGACTTGCCTGCTGAGGGGTTGGACTTGAGTGAGGTGCCCCCAGCTGAAGATTCATGA 1251 0.4876 MASLAQQLSGLRWTTPLPPSTSSSSSSSSSSRQTHHKHHRTRTVVCSVALSNAQNRERIKLKELFQEAYERCRSDPMEGVSFTLEQFTEALDKYDFDSEVGTKIKGTVFGTDAGGAYVDVTAKSSAYLPLQESCIHKVKHVEGAGIFPGLREEFVIIGENEADDSLILSLKAVQFDLAWERCRQLQAEDVVVKGKIVNGNKGGLVAEVEGLKGFVPFSQISTKLTGEELLEKELPLKFVEVDEEQCRLILSHRKAVADSQGQLGIGSVVIGTVQSIKPYGAFVEIGGISGLLHVSQISHDRITDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSEGILGPLGSDLPAEGLDLSEVPPAEDS* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1176 416 CDD S1_RPS1_repeat_hs4 266 334 - -
Dod03g1176 416 Gene3D - 83 181 IPR012340 -
Dod03g1176 416 Coils Coil 351 371 - -
Dod03g1176 416 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 1 416 - -
Dod03g1176 416 CDD S1_RPS1_repeat_ec2_hs2 189 253 - -
Dod03g1176 416 PANTHER 30S RIBOSOMAL PROTEIN S1 1 416 - -
Dod03g1176 416 MobiDBLite consensus disorder prediction 8 42 - -
Dod03g1176 416 ProSiteProfiles S1 domain profile. 189 253 IPR003029 GO:0003676
Dod03g1176 416 SUPERFAMILY Nucleic acid-binding proteins 190 258 IPR012340 -
Dod03g1176 416 SUPERFAMILY Nucleic acid-binding proteins 265 344 IPR012340 -
Dod03g1176 416 Gene3D - 182 262 IPR012340 -
Dod03g1176 416 SUPERFAMILY Nucleic acid-binding proteins 94 196 IPR012340 -
Dod03g1176 416 MobiDBLite consensus disorder prediction 388 416 - -
Dod03g1176 416 Pfam S1 RNA binding domain 265 334 IPR003029 GO:0003676
Dod03g1176 416 Pfam S1 RNA binding domain 187 253 IPR003029 GO:0003676
Dod03g1176 416 ProSiteProfiles S1 domain profile. 101 171 IPR003029 GO:0003676
Dod03g1176 416 MobiDBLite consensus disorder prediction 8 31 - -
Dod03g1176 416 ProSiteProfiles S1 domain profile. 266 334 IPR003029 GO:0003676
Dod03g1176 416 SMART S1_6 187 253 IPR022967 -
Dod03g1176 416 SMART S1_6 264 334 IPR022967 -
Dod03g1176 416 SMART S1_6 99 171 IPR022967 -
Dod03g1176 416 Gene3D - 263 342 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1176 Dod-Chr3 14597799 14601163 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1176 K02945 - gmx:100806905 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1176 03 14597799 14601163 Dod03g1176 03 14597799 14601163 ECH
Dod05g2543 05 51678861 51682073 Dod03g1176 03 14597799 14601163 PCT