Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2518 ATGGTTATGGCTTCCATGTCTCTGTCCTTCTCTTCTTCCATTGTTCCTTCTCCAGTTCCACTTGATAACTGCAGATTCAACAACCCCAGATCCCAAGATCCCATCTTTAGGGTCACCCGTTTCGCTATTTCCTCTCCTCCTTCCAATAAAACTTCAACTTCTTCTTCTTCTTCGGTTACCAAGAAGAGGCACTGGAAGCAAGGTGAGTTTCCGGGTTTGTCGGAAACATCGTTACCTGGGAGTACGAGGAGGAGGAACCCTCCCATCAAGAACATCAAGAAGAAGCTTGACAACAAGAACAATGCCAAGGCATGGGTCAACACTGTCACTGAGGACTTGTGTGAACGCATTGACAAGAAGCAGTGGCTTCAAGCCCTTGAGGTATTTGACATGCTTAAAGAGCAGTCTTTTTACGAACCCAAAGAAGGGACTTACATGAAACTCATTGTGTTGCTTGGGAAATCCGGTCAACCCCACCGTGCCCGCCAGCTTTTTGAAACAATGATTGAAGAAGGTTGTGACCCTACTCCAGAACTTTACACGGCTTTACTTGCCGCATATTGCAGGAGCAACCTCATTGATGAGGCATTCTCGATTCTTGGTGAGATGAAGAACCTCCCTCTTTGCCAGCCTGATGTTTTCACTTACAGTTCCTTGATAAAGGCTTGTATGGATGTTTTGAGGTTTGATTCGGTTGAGTTGCTGTATGAAGAGATGGCTGAAAGGAACATCACGCCCAACACCGTCACTCAGAACATTGTTTTGAGTGGTTACGGTAGGGCAGGGAAGTTTGATCAGATGGAGAAAGTGCTATCGAGTATGCTGGAGAGCGCTACATGCAAGCCTGATGCTTGGACAATGAATATCATCATCAGTATCTTTGGTAATATGGGTCAGATTGATATGATGGAGAAGTGGTATGAAAAATTCCGAGATTTTGGAATAGAACCAGAAACACGCACTTTTAATATCTTGATTGGTGCCTATGGAAAGAAGAGGCTGTATGACAAAATGTCCTCTGTAATGGAGTACATGCGTAAGTTGCAATTTCCATGGACGACCTCTACTTATAACAATGTGATTGAGGCATTTGCAGATGTGGGTGATGCTAAACACATGGAGTATACGTTTGATCAGATGCGTGCTGAGGGTATGAAAGCAGATACCAAGACTTTCTGCTGCCTTATTAATGGTTATGCAAACGCAGGCCTCTTCCATAAAGTAATTAGCAGTGTTCGCCTGGCTGCGAAATTTGAGGTACCTGAGAATACGTCCTTTTACAATGCAGTATTGTCTGCATGTGCAAAGGCAGAGGATTTGATGGAAATGGAGAGAGTTTTCACGCGCATGAAAGATAACCAATGTCAACCAGATGACACAACATTTTCAATCATGGTGGAGGCATATAGAAAAGAAGGTATGAATGACAAGATATTCTATTTGGAGCAGGAAAAGCAGATGATGATGACTGAGGATGAAACAGTGGATGGAGCTGAGGATGAAACCATTGATTGA 1515 0.437 MVMASMSLSFSSSIVPSPVPLDNCRFNNPRSQDPIFRVTRFAISSPPSNKTSTSSSSSVTKKRHWKQGEFPGLSETSLPGSTRRRNPPIKNIKKKLDNKNNAKAWVNTVTEDLCERIDKKQWLQALEVFDMLKEQSFYEPKEGTYMKLIVLLGKSGQPHRARQLFETMIEEGCDPTPELYTALLAAYCRSNLIDEAFSILGEMKNLPLCQPDVFTYSSLIKACMDVLRFDSVELLYEEMAERNITPNTVTQNIVLSGYGRAGKFDQMEKVLSSMLESATCKPDAWTMNIIISIFGNMGQIDMMEKWYEKFRDFGIEPETRTFNILIGAYGKKRLYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKHMEYTFDQMRAEGMKADTKTFCCLINGYANAGLFHKVISSVRLAAKFEVPENTSFYNAVLSACAKAEDLMEMERVFTRMKDNQCQPDDTTFSIMVEAYRKEGMNDKIFYLEQEKQMMMTEDETVDGAEDETID* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2518 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 282 IPR002885 -
Dod05g2518 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Dod05g2518 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Dod05g2518 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Dod05g2518 504 Coils Coil 481 501 - -
Dod05g2518 504 TIGRFAM PPR: pentatricopeptide repeat domain 356 388 IPR002885 -
Dod05g2518 504 TIGRFAM PPR: pentatricopeptide repeat domain 144 176 IPR002885 -
Dod05g2518 504 TIGRFAM PPR: pentatricopeptide repeat domain 179 205 IPR002885 -
Dod05g2518 504 TIGRFAM PPR: pentatricopeptide repeat domain 427 458 IPR002885 -
Dod05g2518 504 TIGRFAM PPR: pentatricopeptide repeat domain 249 284 IPR002885 -
Dod05g2518 504 TIGRFAM PPR: pentatricopeptide repeat domain 214 248 IPR002885 -
Dod05g2518 504 TIGRFAM PPR: pentatricopeptide repeat domain 286 317 IPR002885 -
Dod05g2518 504 TIGRFAM PPR: pentatricopeptide repeat domain 321 349 IPR002885 -
Dod05g2518 504 Gene3D Tetratricopeptide repeat domain 227 372 IPR011990 GO:0005515
Dod05g2518 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Dod05g2518 504 Pfam PPR repeat 321 348 IPR002885 -
Dod05g2518 504 Pfam PPR repeat 144 173 IPR002885 -
Dod05g2518 504 Gene3D Tetratricopeptide repeat domain 373 496 IPR011990 GO:0005515
Dod05g2518 504 Gene3D Tetratricopeptide repeat domain 88 224 IPR011990 GO:0005515
Dod05g2518 504 PANTHER ATPASE EXPRESSION PROTEIN 3 3 493 - -
Dod05g2518 504 MobiDBLite consensus disorder prediction 41 89 - -
Dod05g2518 504 PANTHER OS03G0309800 PROTEIN 3 493 - -
Dod05g2518 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Dod05g2518 504 MobiDBLite consensus disorder prediction 42 61 - -
Dod05g2518 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Dod05g2518 504 Pfam PPR repeat family 423 469 IPR002885 -
Dod05g2518 504 Pfam PPR repeat family 180 223 IPR002885 -
Dod05g2518 504 Pfam PPR repeat family 354 401 IPR002885 -
Dod05g2518 504 Pfam PPR repeat family 246 292 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2518 Dod-Chr5 51391905 51394258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2518 145 484 Miscellaneous Gene Families AT4G11690 22.581 2.91e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2518 - - aip:107635404 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2518 05 51391905 51394258 Dod05g2518 05 51391905 51394258 ECH
Dod05g2518 05 51391905 51394258 Dod03g1663 03 23327870 23330751 PCT