Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1663 ATGGCCTCGATATCGCTCTCATTTTCTTCTTCCATCGTTCCCACTCCCATTTCGCATGCCAAATCCAACCCCAACCAGATAATAACCCTGGACCCTATTCTTCGTGTTACCCGCTGCTTATCTTCTTCTTCGACATCGTTGGTGTCTAAAAACAAACACCAGAAAGGTGAGTTTCCTGGCATCACGGAAACACCTTTCTATGAGAGCACGTGGAAGAACACACCCATTAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAATGCGGAGAACAAGAACAGTGCTAAGGCCTGGGTCTATACTCTGCCTGAAACCTTTTCCTACTGCATTCACAAGAAGCAATGGGTTAGAGCCCTTGAGTTATTTGACCTTCTTAGAGAGCAACCATATTATGAACCCAAAGAAGTGACTTACATGAAACTCATTGTGCTGCTTGGAAAATCTGGCCAGCCCCGTCGTGCCCATCAGCTTTTCAGCACTATAAAAGAGGATGGTTGCGAAAGTACCCAGCTTTACACTGCCTTACTTGCAGCATATTGTCGGAACAGCCTGATTCATGAGGCATTTTTGGCTCTTGATGAGATGAAGAGCCTCCCTCATTGCCAACCTGATATTTCCACTTACAGTACCCTGATAAAAGCTTGTGTAAATGCTCTGAAATTTGAATTAGTTGAGTTGCTGTATGAAGATGTGGCTGAAAGATCTATCATGCCTAACACTATCACTCAGAATGTTGTCTTGAGTGGTTATGGTAAAGCTGGGAGATTTGATCAGATGGAGAAACTGCTGTCAACTATGATGGGGAGCACTACATGCAAGCCTGATGTATGGACAATGAACACGGTTATCAGTGTCTTTGGTAATAAGGGTCAAATTGATATGATCGAGAAATGGTATGAGAAATTCTGTAATTTTGGAATACGACCAGAAACACACACTTTTAATATTATGATAGGAGCTTATGGGAAGAAAAGAATGTATGACAAAATAGCATCTGTTATGCAGTATATGCGCAAGTTACAATGTCCATGGACGACCTCAACTTTTAACAATGTGATTGAGACATTTGCAGATGTGGGTGATGGTAAAAACATGGAGTATGCATTTGATCAGATGTGTGCTGAGGGTATCAGAACAGATACTAAGACTTTCTGCTGCCTTATCACTGGTTATGCCAATGCAGGTATCTTCCATAAAGTAATTAGCACTGTTCACCTGGCTGGGAAGTTTAAGATACCTGAGAATACTTCCTTTTATAATGCAGTTATATCTGCATGTGCAAAGGCAGAGGATTTGATGGAAATGGAAAGAGTTTTCAAGTGTATGAAAGAAAAACAATGTCAACCAGATGACACAACATACTGTGTCATGGCTGAGGCATACAGAAAAGAGGGCATGAATGACAAGATCTACTATTTGGAGCAGGAAAAGCAGATGATGTTAACTGATGACCAAAAGTTGAGTAAGCATGAGGATGAAGTCCTTGATTGA 1488 0.4113 MASISLSFSSSIVPTPISHAKSNPNQIITLDPILRVTRCLSSSSTSLVSKNKHQKGEFPGITETPFYESTWKNTPIKKKKKKKKKKNAENKNSAKAWVYTLPETFSYCIHKKQWVRALELFDLLREQPYYEPKEVTYMKLIVLLGKSGQPRRAHQLFSTIKEDGCESTQLYTALLAAYCRNSLIHEAFLALDEMKSLPHCQPDISTYSTLIKACVNALKFELVELLYEDVAERSIMPNTITQNVVLSGYGKAGRFDQMEKLLSTMMGSTTCKPDVWTMNTVISVFGNKGQIDMIEKWYEKFCNFGIRPETHTFNIMIGAYGKKRMYDKIASVMQYMRKLQCPWTTSTFNNVIETFADVGDGKNMEYAFDQMCAEGIRTDTKTFCCLITGYANAGIFHKVISTVHLAGKFKIPENTSFYNAVISACAKAEDLMEMERVFKCMKEKQCQPDDTTYCVMAEAYRKEGMNDKIYYLEQEKQMMLTDDQKLSKHEDEVLD* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1663 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Dod03g1663 495 Pfam PPR repeat 135 165 IPR002885 -
Dod03g1663 495 Pfam PPR repeat 243 266 IPR002885 -
Dod03g1663 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Dod03g1663 495 Pfam PPR repeat family 170 215 IPR002885 -
Dod03g1663 495 Pfam PPR repeat family 273 318 IPR002885 -
Dod03g1663 495 Pfam PPR repeat family 414 460 IPR002885 -
Dod03g1663 495 PANTHER ATPASE EXPRESSION PROTEIN 3 4 483 - -
Dod03g1663 495 Gene3D Tetratricopeptide repeat domain 99 268 IPR011990 GO:0005515
Dod03g1663 495 Gene3D Tetratricopeptide repeat domain 363 493 IPR011990 GO:0005515
Dod03g1663 495 TIGRFAM PPR: pentatricopeptide repeat domain 311 343 IPR002885 -
Dod03g1663 495 TIGRFAM PPR: pentatricopeptide repeat domain 418 449 IPR002885 -
Dod03g1663 495 TIGRFAM PPR: pentatricopeptide repeat domain 240 274 IPR002885 -
Dod03g1663 495 TIGRFAM PPR: pentatricopeptide repeat domain 171 203 IPR002885 -
Dod03g1663 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Dod03g1663 495 PANTHER OS03G0309800 PROTEIN 4 483 - -
Dod03g1663 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 273 IPR002885 -
Dod03g1663 495 Gene3D Tetratricopeptide repeat domain 269 362 IPR011990 GO:0005515
Dod03g1663 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Dod03g1663 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1663 Dod-Chr3 23327870 23330751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1663 131 475 Glycosyltransferase AT1G05670 20.231 5.52e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1663 - - adu:107479398 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2518 05 51391905 51394258 Dod03g1663 03 23327870 23330751 PCT