Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2427 ATGATGGTGGAGACCTCAACGCTTGGTCGGTTCCACCACCAGAGGCTCGAATTCAAGCGCTGTTTCCCTGCATTCTTAACCTCCCACAGGACCCTCTTCACGGTGCTGTGGATCGTGGCTTTCGCCTCGGTCTTCGTGTGGCAGAGGAACGTGGTCGGAGGTTTCTTCGTGTACGGTCGGAACCCGCCGGCGAGGCCGGTTCCGAAGCTGAGGCCGGTGGCTTTCAACTTGACTGATTTCGGTGGGGTCGGTGATGGTGTCACTCTCAACACTGAGGCTTTTGAGAGGGCCGTTTCCACGATATCTAAGTTGGGGAAGAAAGGTGGTGCTCAGCTCAATGTTCCTCCAGGTCGTTGGCTTACCGCACCTTTCAATCTTACCAGCCATATGACCCTCTTTCTAGCTGAAGATGCTGTTATACTCGGAATTGATGATGAAAAGTATTGGCCACTGATGCCTCCACTGCCTTCATATGGGTATGGGAGGGAGCATCCTGGGCCTCGATATGGCAGTTTGATTCATGGTCAAAATCTTAAAGATATTGTGATAACAGGGCATAACGGTACCATAAATGGACAGGGACAAGCTTGGTGGAAAAAATATCGCCAGAAGCGTCTCAACCACACAAGGGGACCACTTGTTCAGATCATGTGGTCTAGTCACATTGTTATTACTAATATTACTTTGCGCAACTCTCCTTTTTGGACACTTCATCCATATGACTGCAAAAACATTACAATAAAAAATGTTACAATATTGGCTCCTGTAACTGACGCTCCAAATACCGATGGCATAGATCCTGACTCTTGTGAGGATATGTTAATAGAGGACTGTTACATAAGTGTGGGAGATGATGCAATTGCAATAAAAAGTGGTTGGGATCAATATGGAATTGCTTATGGAAGACCTTCCATGAATATAATGATTCGGAACCTTGTTGTTCGCTCTGTGGTCAGGTCAGTCGCTAACTCAGCCAACTTGTACTTCTCTGCATGTCTTTCACCTTCATATTTTTGGAGAGTTAGTAACTGCTGTGAAGTATAA 1044 0.4655 MMVETSTLGRFHHQRLEFKRCFPAFLTSHRTLFTVLWIVAFASVFVWQRNVVGGFFVYGRNPPARPVPKLRPVAFNLTDFGGVGDGVTLNTEAFERAVSTISKLGKKGGAQLNVPPGRWLTAPFNLTSHMTLFLAEDAVILGIDDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQNLKDIVITGHNGTINGQGQAWWKKYRQKRLNHTRGPLVQIMWSSHIVITNITLRNSPFWTLHPYDCKNITIKNVTILAPVTDAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNIMIRNLVVRSVVRSVANSANLYFSACLSPSYFWRVSNCCEV* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2427 347 SUPERFAMILY Pectin lyase-like 64 315 IPR011050 -
Dod05g2427 347 Pfam Glycosyl hydrolases family 28 170 294 IPR000743 GO:0004650|GO:0005975
Dod05g2427 347 Gene3D - 63 332 IPR012334 -
Dod05g2427 347 PANTHER POLYGALACTURONASE-RELATED 22 320 - -
Dod05g2427 347 PANTHER PECTIN LYASE-RELATED 22 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2427 Dod-Chr5 50553209 50560023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2427 10 320 Glycoside Hydrolase AT1G19170 75.851 2.57e-180 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2427 - - lja:Lj5g3v1749290.1 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2427 05 50553209 50560023 Dod03g1597 03 21894584 21898776 PCT