Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1597 ATGATGGTGGAGGAGAACTCAACAATACAAGGGTGGTTCCAGCACTATAACTTGGACTTGAAGCATTGGTTTCCAGCAATCTTGGCCTCTCACAAGACCCTCTTTGCGTTCCTTTGGGTTGCTGCGTTTGCTTCTGCTTTCTTGTGGCAGAGGAGTGCACTTGGTGGCTTCTTGGTGTTGGGCGGTGACCCTGTGAGTTCGTCACTGCCTAAGCTGAGGCCTGTAGCTTTCAGTTTGGTGGATTTTGGTGGGGTTGGTGATGGGGTTACCCTCAACACCAAGGCCTTTGAGAAGGCTGTTTCTGCTATCTCCAAATTAGGACACAAGGGTGGTGCCCAGCTCAATGTGCCACCTGGTCGTTGGCTTACAGCACCCTTTAATCTCACCAGTCATATGACTCTCTTTCTGGCTGAAGATGCTGTCATACTTGGAATTGAGGATGAGAAGTATTGGCCACTGATGCCTGCATTGCCTTCATATGGATATGGAAGGGAACATCCTGGGCCTCGATATACCAGTTTGATACATGGTCAAAATCTTAGAGATGTTGTAATAACAGGGCATAATGGAACCATAAATGGACAGGGACAATCTTGGTGGACAAAATATCTCCGGAAGCTTCTGAACCACACAAGGGGGCCACTGGTACAGATCTTGTGGTCTAGTGACATTGTGATCACTAATATTACCTTGCGTGACTCTCCTTTCTGGACACTTCATCCATTTGACTGCAAGAATGTAACAATTAAAAACCTTACAATATTGGCTCCAGTGTATCATGCTCCAAATACAGATGGCATAGATCCTGATTCTTGTGAGGATATGTTGATAGAGGACTGTTACATAAGTGTGGGGGATGATGCCATTGCAATAAAAAGTGGCTGGGATCAGTATGGAATTGCTTATGGAAAGCCTTCAAGGAATATAGTAATCCGAAACCTTGTCGTTCGTTCTAATGTCAGTGCGGGCATCTCAATAGGCAGTGAAATGTCTGGCGGGGTATCCAATGTCACGGTGGAGAACATCCTTGTATGGGAATCGAGGCGTGCCATCAGGATCAAGACAGCCCGAGGAAGAGGAGGATATGTCACCCAAATAACATACCAAAATCTAACATTTGAGAATTGCCGGGTTGGGATTGTGATCAAGACAGATTACAACCAACACCCTGATGCTGGATATGACCCAAAAGCACTTCCACTTCTCAAAGACATAAGCTTCACCACTGTCCGTGGCCATGCAGTGCGAGTCCCGGTGCGTATCCAAGGCAGTGAAGAGATTCTAGTTAGAAATGTAACCTTCAAGGATATGTCAATTGGGATAACATCCAAGAAGAAGCATGTCTTTCAATGTGCCTTTGTTCATGGTCAGGTAATAGGGACCATAATTCCTTCCCCTTGTGAGAACTTTGATCAGTACAATGAGCAAGGGCAGCTAGTTAAGCATGCTGCACCGTGGAATGTAACAACTATAGATTATCGAGTTTGA 1488 0.4556 MMVEENSTIQGWFQHYNLDLKHWFPAILASHKTLFAFLWVAAFASAFLWQRSALGGFLVLGGDPVSSSLPKLRPVAFSLVDFGGVGDGVTLNTKAFEKAVSAISKLGHKGGAQLNVPPGRWLTAPFNLTSHMTLFLAEDAVILGIEDEKYWPLMPALPSYGYGREHPGPRYTSLIHGQNLRDVVITGHNGTINGQGQSWWTKYLRKLLNHTRGPLVQILWSSDIVITNITLRDSPFWTLHPFDCKNVTIKNLTILAPVYHAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGKPSRNIVIRNLVVRSNVSAGISIGSEMSGGVSNVTVENILVWESRRAIRIKTARGRGGYVTQITYQNLTFENCRVGIVIKTDYNQHPDAGYDPKALPLLKDISFTTVRGHAVRVPVRIQGSEEILVRNVTFKDMSIGITSKKKHVFQCAFVHGQVIGTIIPSPCENFDQYNEQGQLVKHAAPWNVTTIDYRV* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1597 495 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 24 493 - -
Dod03g1597 495 Gene3D - 65 458 IPR012334 -
Dod03g1597 495 PANTHER PECTIN LYASE-RELATED 24 493 - -
Dod03g1597 495 SMART pbh1 272 293 IPR006626 -
Dod03g1597 495 SMART pbh1 334 355 IPR006626 -
Dod03g1597 495 SMART pbh1 424 445 IPR006626 -
Dod03g1597 495 SMART pbh1 244 271 IPR006626 -
Dod03g1597 495 SMART pbh1 306 328 IPR006626 -
Dod03g1597 495 SMART pbh1 363 384 IPR006626 -
Dod03g1597 495 Pfam Glycosyl hydrolases family 28 172 455 IPR000743 GO:0004650|GO:0005975
Dod03g1597 495 SUPERFAMILY Pectin lyase-like 64 469 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1597 Dod-Chr3 21894584 21898776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1597 2 495 Glycoside Hydrolase AT1G19170 70.553 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1597 - - adu:107479176 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1597 03 21894584 21898776 Dod03g1597 03 21894584 21898776 ECH
Dod05g2427 05 50553209 50560023 Dod03g1597 03 21894584 21898776 PCT