Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2406 ATGCATGACAACGGCCATTCCTGCAAGAACCCCTCAACGGTTGTAGTGGACGATTTTGTCTACACTGACCTTGACACTGCTGGTAACACCTCAAACATCATCAAAGCTTCAGAAAGGCCAGCATTTGATGCTCAGTTCCCAGGTGTCAATGGCCTTGGCATCTCCATAGCCCGTTTGGTCTTGGAAGCTAGTGGAGTAATACCACTCCATACCCACCCTGGTGCTTCAGAGGTACTTTATGTTGTGCATGGTGCAATCATAGCAGGGTTCATTTCATCTGCAAATGCTGTCTACACAAAAAGTCTCTCAAAAGGGAACACTATGGTGTTCCCTCAAGGCTTGGTGCACTTCCAGATCAATTCGGATACGACTCCAGCACTCCTTCAGCAGCGCCAATCCTGGACTTCAAATCACGGACTTTGCTTTGTTAAAAAATGA 438 0.4703 MHDNGHSCKNPSTVVVDDFVYTDLDTAGNTSNIIKASERPAFDAQFPGVNGLGISIARLVLEASGVIPLHTHPGASEVLYVVHGAIIAGFISSANAVYTKSLSKGNTMVFPQGLVHFQINSDTTPALLQQRQSWTSNHGLCFVKK* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2406 145 SMART Cupin_1_3 22 129 IPR006045 -
Dod05g2406 145 PRINTS Germin signature 100 120 IPR001929 GO:0030145
Dod05g2406 145 PRINTS Germin signature 70 90 IPR001929 GO:0030145
Dod05g2406 145 SUPERFAMILY RmlC-like cupins 4 127 IPR011051 -
Dod05g2406 145 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 4 126 - -
Dod05g2406 145 Gene3D Jelly Rolls 1 131 IPR014710 -
Dod05g2406 145 Pfam Cupin 26 127 IPR006045 -
Dod05g2406 145 CDD cupin_OxOx 4 128 - -
Dod05g2406 145 ProSitePatterns Germin family signature. 65 78 IPR019780 GO:0030145
Dod05g2406 145 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 4 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2406 Dod-Chr5 50341985 50342650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2406 4 127 Miscellaneous Gene Families AT5G20630 65.323 3.32e-55 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2406 - - gmx:100806553 177.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2406 05 50341985 50342650 Dod03g1568 03 21408530 21409849 PCT