Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1568 ATGAAGATGATTCTCACCATATTCTCCATCTTTTCCCTCCTCTCATTCTCCCACGCTGCAGTGGTAGACTTCTGCGTAGCAGATCTCACAGCTCCCAATGGCCCCGCAGGATATTCCTGCAAGAACCCAACAAAGGTCACTGCAGACGATTTCGCCTACAGTGGCCTTGGCGTTCCAGGGAACACGACGAACATCATCAAAGCTGCCGTGACGCCAGCTTTTGATGCTCAGTTCCCTGGCGTCAACGGCCTCGGAATCTCCATGGCACGTTTGGACTTAGCGCTGGGTGGAGTCATTCCACTTCACACGCACCCTGGTGCTTCGGAGATACTTGTTGTAGTGCAAGGAACAATATGTGCTGGGTTTATCTCATCATCTGCCAACATTGTTTACATTAAAACTCTCAAAAAAGGAGATGTTATGGTGTTCCCTCAGGGATTGTTGCATTTCCAAATCAACAGTGGTGGGACTCAAGCACTGGCCTTTGTGAGCTTCAGCAGTGCCAACCCTGGTCTCCAGATCCTTGACTTTGCATTGTTCAAGAGTGATTTCCCAACTGAGTTGATAACCGCAACCACTTTCCTTGATGCTGCTCAGGTGAAGAAGCTCAAGGGTGTTCTTGGAGGGACAGGTTAA 636 0.4937 MKMILTIFSIFSLLSFSHAAVVDFCVADLTAPNGPAGYSCKNPTKVTADDFAYSGLGVPGNTTNIIKAAVTPAFDAQFPGVNGLGISMARLDLALGGVIPLHTHPGASEILVVVQGTICAGFISSSANIVYIKTLKKGDVMVFPQGLLHFQINSGGTQALAFVSFSSANPGLQILDFALFKSDFPTELITATTFLDAAQVKKLKGVLGGTG* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1568 211 PRINTS Germin signature 102 122 IPR001929 GO:0030145
Dod03g1568 211 PRINTS Germin signature 166 181 IPR001929 GO:0030145
Dod03g1568 211 PRINTS Germin signature 133 153 IPR001929 GO:0030145
Dod03g1568 211 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 8 207 - -
Dod03g1568 211 SUPERFAMILY RmlC-like cupins 21 205 IPR011051 -
Dod03g1568 211 Gene3D Jelly Rolls 18 210 IPR014710 -
Dod03g1568 211 Pfam Cupin 55 201 IPR006045 -
Dod03g1568 211 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 8 207 - -
Dod03g1568 211 CDD cupin_OxOx 17 207 - -
Dod03g1568 211 ProSitePatterns Germin family signature. 97 110 IPR019780 GO:0030145
Dod03g1568 211 SMART Cupin_1_3 54 201 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1568 Dod-Chr3 21408530 21409849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1568 1 210 Miscellaneous Gene Families AT5G20630 71.564 8.19e-105 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1568 - - gmx:100806553 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1568 03 21408530 21409849 Dod03g1568 03 21408530 21409849 ECH
Dod05g2406 05 50341985 50342650 Dod03g1568 03 21408530 21409849 PCT