Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2357 ATGGCGAGGCTGCTTCGCAACACTTCCCTTCTTAAGCGTGGTACTCTGTTCCTTCCTCCTCAGGGCTTTAAACTAGGATTATTGGGCCCTTCTCACGTTTTGACCTTTTCATCTAAAGGTAGAAGGCGCTCTAAATCCGATGGAAGTGAATCAGGAGAAGAGAGCATGTCTAAGAAAGAGGTGGCCCTTCAACAAGCTCTTGATCAGATCACTTCTGCATTTGGAAAGGGATCTATCATGTGGCTTGGTCGCTCTGTCTCGCCGAAACATGTACCTGTAGTGTCAACAGGTTCTTTTGCTCTTGATATAGCGCTAGGAGTTGGAGGACTTCCAAAGGGACGTGTTGTGGAAATATATGGTCCTGAAGCTTCTGGGAAAACAACTCTTGCTTTACATGTGATTGCGGAGGCACAGAAGCAAGGAGGCTACTGTGTCTTTGTTGATGCTGAGCATGCTCTTGATAAGGCACTGGCAGAATCTATTGGTGTGAATACTGAGAACTTGCTTCTCTCACAACCAGATTGTGGTGAACAAGCACTTGGTCTTGTGGATACCTTAATCCGTAGTGGTTCAGTTGATGTAATTGTTGTTGACAGTGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGCCAGGCCCTTCGAAAATTGAGCCACTCCTTGTCAGTTTCTCAAACTATATTGATTTTTATAAACCAGGTGAGGTCAAAGCTTTCTACTTTTGGGGGATTTGGTGGGCCTACTGAGGTTACGTGTGGTGGTAATGCGTTGAAATTCTATGCTTCTGTGCGGCTAAATATAAGAAGAATAGGGTTTGTGAAGAAAGGCGAAGAGATATTAGGAAGCCATCTACTAGTCAAGGTTGTGAAGAACAAGCTTGCCCCTCCATTTAAAACGGCTGAGTTTGAGCTTCAGTTTGGCAAGGGCATAAATAGAGAATCAGAGATAATAGACTTGAGCGTAAAACACAAACTCATCTCAAAGGCTGGTGCTATGTATTACTTTAATGATCGGAATTTCCGCGGTAAAGATGCTTTTAGGAGTTTCCTGGCTGAGAATTCTGGTGCATTAGAAGAACTACAAATGAAGCTCAGGGAGAAGCTTCTTGATGGTGAGACAGAAAAGGTGCAAGAGTCAGATGTGGCTAGTGGAGATGTTACAGAAGAAATTACAACACTTGATTCTACTGATGAAGAAGCTGCAGCAGCTGTAGAAGCATGA 1266 0.4423 MARLLRNTSLLKRGTLFLPPQGFKLGLLGPSHVLTFSSKGRRRSKSDGSESGEESMSKKEVALQQALDQITSAFGKGSIMWLGRSVSPKHVPVVSTGSFALDIALGVGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDKALAESIGVNTENLLLSQPDCGEQALGLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSVSQTILIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASVRLNIRRIGFVKKGEEILGSHLLVKVVKNKLAPPFKTAEFELQFGKGINRESEIIDLSVKHKLISKAGAMYYFNDRNFRGKDAFRSFLAENSGALEELQMKLREKLLDGETEKVQESDVASGDVTEEITTLDSTDEEAAAAVEA* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2357 421 ProSitePatterns recA signature. 271 279 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Dod05g2357 421 TIGRFAM tigrfam_recA: protein RecA 59 381 IPR013765 GO:0003697|GO:0005524|GO:0006281
Dod05g2357 421 MobiDBLite consensus disorder prediction 390 421 - -
Dod05g2357 421 Pfam recA bacterial DNA recombination protein 62 326 IPR013765 GO:0003697|GO:0005524|GO:0006281
Dod05g2357 421 SUPERFAMILY RecA protein, C-terminal domain 327 382 IPR023400 -
Dod05g2357 421 ProSiteProfiles RecA family profile 2. 259 330 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Dod05g2357 421 MobiDBLite consensus disorder prediction 38 58 - -
Dod05g2357 421 CDD recA 58 385 IPR013765 GO:0003697|GO:0005524|GO:0006281
Dod05g2357 421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 325 IPR027417 -
Dod05g2357 421 SMART AAA_5 112 286 IPR003593 -
Dod05g2357 421 Gene3D - 88 385 IPR027417 -
Dod05g2357 421 ProSiteProfiles RecA family profile 1. 90 249 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Dod05g2357 421 MobiDBLite consensus disorder prediction 40 57 - -
Dod05g2357 421 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 412 - -
Dod05g2357 421 Hamap Protein RecA [recA]. 59 386 IPR013765 GO:0003697|GO:0005524|GO:0006281
Dod05g2357 421 PRINTS RecA protein signature 182 211 IPR013765 GO:0003697|GO:0005524|GO:0006281
Dod05g2357 421 PRINTS RecA protein signature 220 249 IPR013765 GO:0003697|GO:0005524|GO:0006281
Dod05g2357 421 PRINTS RecA protein signature 301 330 IPR013765 GO:0003697|GO:0005524|GO:0006281
Dod05g2357 421 PRINTS RecA protein signature 268 296 IPR013765 GO:0003697|GO:0005524|GO:0006281
Dod05g2357 421 PRINTS RecA protein signature 354 371 IPR013765 GO:0003697|GO:0005524|GO:0006281
Dod05g2357 421 PRINTS RecA protein signature 148 177 IPR013765 GO:0003697|GO:0005524|GO:0006281
Dod05g2357 421 PANTHER RECA 1 412 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2357 Dod-Chr5 49887740 49896760 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2357 K03553 - gmx:100781271 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2357 05 49887740 49896760 Dod05g2357 05 49887740 49896760 ECH
Dod05g2357 05 49887740 49896760 Dod03g1507 03 20587367 20594959 PCT