Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1507 ATGCATTTGCAGCACCCACATTCCAATTCCCTTGTTTCCATTTCATTCAATTCCTTTCACAACATAAAACGTTATTCCTTCTTTCGGTGGTTCCATTCCATGGCGAGGCTGCTTCGTAACACTTCCCTTTTCAGACGCTCTTTGTTCCCTCCCGACCTTCCTACGGTGAATGCAGATCTCGCTTTTGAAGAGCCACTTAGTTATGGCTCCAAACCAGGAATGTTGGGCATGTCTCATGCTTTGAGCTTTTCAACGAGAGGTAGAAGGCGCTCTAAATCAGATGGAAGTGACTCGTGTGAAGAGAACATGTCAAAGAAAGATTTGGCCCTGAAACATGCCATGGATCAGATCACTTCTGCATTTGGAAAGGGTTCTATCATGTGGCTTGGTCGTTCTGTCTCACCAAAAAATGTGCCTGTGGTGTCCACTGGTTCTTTTGCTCTTGATATAGCTCTGGGGGTTGGTGGTCTTCCAAAGGGACGCGTTGTGGAAATATTTGGACCAGAGGCTTCTGGGAAAACAACTCTTGCTTTACATGTGATTGCAGAGGCACAGAAGCTAGGAGGCTATTGTGCCTTTGTTGATGCTGAGCATGCACTTGATAAGGCCCTTGCAGAGTCAATTGGTGTAAATACTGAGAACTTGCTTCTTTCACAACCTGATTTTGGTGAACAAGCACTTAGCCTTGTGGATACCTTAATCCGGAGTGGGTCAGTTGATGTAATTGTTGTTGATAGTGTGGCTGCTCTCGTTCCTAAAGGTGAACTTGATGGTGAGATGGGTGATGCTCACATGGCTATGCAGGCTAGGTTGATGAGCCAGGCACTTCGGAAGTTGTGCCACTCCTTGTCACTTTCACAGTGTATATTGATTTTTATAAACCAGGTGAGGTCAAAGCTTTCTACTTTTGGGTTTGGTGGGCCTACAGAAGTTACTTGTGGCGGTAATGCATTGAAATTCTATGCTTCTGTTAGGCTAAATATAAAAAGGGTAGGGCTTGTCAAGAAGGGTGAAGAGACTTTAGGAAGCCAGGTCCAGGTTAAGGTTGTGAAGAACAAGCTTGCACCTCCATTTAAAACAGCACAGTTTGAGCTTGAGTTTGGTAAGGGTATATGCAGACACACAGAGATTATAGATTTGAGCCTAAAACACAAGCTCATCTCGAAGAGCGGTCCATATTATGGATATAACAGCCAGAATTTCCTCGGTAAGGATGCTCTGAAGAGGTTCCTGGCTGACAGTGATATTACTCAAGAATTAACAACAAAGCTCAGGGAGAAGCTTCTTAATGCTGAGACAGAAGTGGTCCCAGAGGCACAGGATGTAGTTGGAGAAGTGGTTGTATCTGCAGATTCTACTGATGAAGAAGCAGCTGTTGCTGTAGAAGCATGA 1392 0.4461 MHLQHPHSNSLVSISFNSFHNIKRYSFFRWFHSMARLLRNTSLFRRSLFPPDLPTVNADLAFEEPLSYGSKPGMLGMSHALSFSTRGRRRSKSDGSDSCEENMSKKDLALKHAMDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGVGGLPKGRVVEIFGPEASGKTTLALHVIAEAQKLGGYCAFVDAEHALDKALAESIGVNTENLLLSQPDFGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILIFINQVRSKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRVGLVKKGEETLGSQVQVKVVKNKLAPPFKTAQFELEFGKGICRHTEIIDLSLKHKLISKSGPYYGYNSQNFLGKDALKRFLADSDITQELTTKLREKLLNAETEVVPEAQDVVGEVVVSADSTDEEAAVAVEA* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1507 463 SUPERFAMILY RecA protein, C-terminal domain 374 427 IPR023400 -
Dod03g1507 463 Gene3D - 136 434 IPR027417 -
Dod03g1507 463 TIGRFAM tigrfam_recA: protein RecA 106 426 IPR013765 GO:0003697|GO:0005524|GO:0006281
Dod03g1507 463 ProSitePatterns recA signature. 317 325 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Dod03g1507 463 ProSiteProfiles RecA family profile 2. 305 376 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Dod03g1507 463 SMART AAA_5 159 332 IPR003593 -
Dod03g1507 463 PANTHER RECA 34 447 IPR013765 GO:0003697|GO:0005524|GO:0006281
Dod03g1507 463 Hamap Protein RecA [recA]. 106 431 IPR013765 GO:0003697|GO:0005524|GO:0006281
Dod03g1507 463 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 34 447 - -
Dod03g1507 463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 371 IPR027417 -
Dod03g1507 463 PRINTS RecA protein signature 347 376 IPR013765 GO:0003697|GO:0005524|GO:0006281
Dod03g1507 463 PRINTS RecA protein signature 229 258 IPR013765 GO:0003697|GO:0005524|GO:0006281
Dod03g1507 463 PRINTS RecA protein signature 267 296 IPR013765 GO:0003697|GO:0005524|GO:0006281
Dod03g1507 463 PRINTS RecA protein signature 314 342 IPR013765 GO:0003697|GO:0005524|GO:0006281
Dod03g1507 463 PRINTS RecA protein signature 195 224 IPR013765 GO:0003697|GO:0005524|GO:0006281
Dod03g1507 463 CDD recA 105 430 IPR013765 GO:0003697|GO:0005524|GO:0006281
Dod03g1507 463 Pfam recA bacterial DNA recombination protein 109 371 IPR013765 GO:0003697|GO:0005524|GO:0006281
Dod03g1507 463 ProSiteProfiles RecA family profile 1. 137 296 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1507 Dod-Chr3 20587367 20594959 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1507 K03553 - gmx:100798983 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2357 05 49887740 49896760 Dod03g1507 03 20587367 20594959 PCT