Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2300 ATGCGCTCAGGAGGAAGTTGTGCATTGCAGCAGACCCTCACAGCGGAGGCTGCTTCCGTGTTGAAGCACTCTCTGGGGTTGGCTCGCAGGAGGGGCCATGCACAGGTCACTCCTCTCCACGTGGCAGCCACTCTTCTCTCCCTCAGAGCCAGCTCCTTCAGAAGGGCTTGCCTCAAGTCACAGCCACCACACCAACAGCAACAACCTCCTCCTCCTTCTTCTTCTTCACACCCTCTCCAATGCAGGGCCCTTGAGCTTTGCTTCAATGTTGCCCTCAACAGGCTCCCTACAACACCTTCTCCTCTTATCCACTCCCAGCCTTCACTCTCCAATGCTCTCATTGCTGCCCTCAAGAGGGCACAGGCTCACCAGAGAAGGGGCTGCATTGAGCAGCAGCAGCAGCAGCAGCAGCCTCCTCTTCTCACCATCAAGGTTGAGCTTGAACAGCTTGTTATTTCCATACTTGATGACCCCAGTGTTAGCAGGGTTATGAGAGAGGCTGGTTTCTCCAGCACTGCTGTTAAGAACAACATTGAGGACTTGTCTTCTGCACCTTCTGTTGTGTTCCAGTGTTACAACACTTCTGGTGGTGTTTTCTCTTCTCCTTGCTCACCTTCCACCAGTGAGAGCCATAGAGAAAATTATCTCATCAACTCTAGTATTAGCAATTTTAGGCATGCTCATCATTTCTTGGCTGCTTACAGTACTTCTTCTTCAGAGTTCAACCCGGTTCTCATCTCCCCACCGAAGAAGGCACCGGTGTATCCCATCAGTACTGGTGCAGTTTCTTCCTATAAGGATGATGTGAAGCTGGTTCTGGATATTCTCCTGAGAAAGAAGAAAAGGAACACTGTGATAGTTGGTGACTCGGTGACATTGACTGAAGGCCTTGTGGGAGAGCTGATGGGAAGGTTTGAAAGGTCAGAGGTTCCTGATGAGTTGAAGTCAACCCATTTCATCAAGTTTCAGTTCACTTCAGGCTCTTTGAGGGACATGAAAAGAGATGAAATTGAGGTGAAACTCTTGGAGCTGAAGACGAAGGTGGATGCTGTTGCATCAGGAGGAGCCATTTTTTATATTGGGGACCTGAAGTGGACAGCGGAAGAAGCATCTTTGAGTGGAAAAGAGGGAGGGTCCCAGGAAGGGGAAGTTTCTGGTGGTTATAACCCAGTTGATCATTTGGTCTCAGAAATGGGAAAGATGTTCTCTGAGTGCGGAACAACATCAAATGCTAGTAAGGTGTGGCTAACGGCCACTGCAACTTATCAAACATACATGAGGTGTCAAATGAGGCAACCCTCTCTTGAGATGCAATGGGCTTTTCAGGCTGTTCTTGTTCCATCTGGTGGACTTGGCTTGAGTCTCCATGCTTCCAGTGTACTTGATTCAAAGATGACCATGTCCCAGAACCCATATAACATGCTGGAAACAAAGCTCTTAGGTAACAAGGAGCAGCAGGAGAGGCTCAATTGCTGTGAAGAATGTGCCTCCAATTATGAAAAAGAAGCCCAATTTCTCAGACCAGGCCAGAAGAAAATGTTGCCTTTCTGGCTTCAGCCTCATAGCAATGAAGCCAATCATCAGAAGGATGAATTAACCGAGCTGAGAAGAAAATGGAATAGACTATGCCAGTGTCTCCACCAAAGCAAACAGCCACAGAACCACTGGAGCAACACCTTATGCAGCAATAACACTTGGAATGGAAAGATCTACCCTTACAATTCATCAAGTTCTATATCCTTTGCAAACAATGCTACAAAACCAACCTATAGCTCCAATCTTGTACCGCGATTCCGGCGTCAACAATCATGCACCATTGAGTTCAATTTCAGCGATAAAAGGCAAGAATCAGAACCAGTATTGGGTTCTCTTGAGTGCATGGAAGGTAAAGAAGTAAAGATTACTCTTGCTCTTGGGAATGGTGGTTCAGGTGAAACGGTGGAAAATATAACCGATACAACACTGCGAAGAGCTCATGTTTGTAAACTATTGCAGGAGAATGTGCCATGGCATTCTGAGACTCTTCCTTCCATAGCAGAGGCCTTGGTTGATTCCAAATCCGCAAAGCAAAGTAACAACATTACTTGGTTGTTTTTGCAAGGCAATGACTCCATTGGGAAAAGAAGGTTGGCACTTGCTATTGCAGAATCAGTTTTTGGCTCAGCTGATATGCTTTTTCACTTGGACATGCTAAAAAAGAGAGAGAGTTCAATGGCCCCGTATTCTGAAATGCTTGCAGGAGCATTGAAAACTCATCAACAACTTGTGGTGTTGATTGAAAATGTTGACTTTGCTGATGCCCAATTCAAGAAAATCCTTGATGATGGATTTCAAACAGGAAAGTTTGGAAATTTAAGAAGGTCAGAAGAGAATTCAGGCCAAAAAGTGATATTCATATTGACAAGTGGTGGAACCACAAGCAATGAAGAGATAAATGAGGACTTTGTGATGACGTTGTTGCTGCAGGTCAATGAAAGCAAGCCTAACTTAGGGGCACCTTGTTTTGGCCACAAGCGCAGGGCTGAATTCGATTTGTTTTCCAAGATCAAGAGACCCAGAATTGAAGAAAAGGAAGAGCCGTTGTTGGTCTCTGAACAAGTGATGATCAAGAAGAAAGATTTTTCAAGACAGTCAAGTTTTAACACCCTTGATCTGAACATGAAAGCTGATGAAGAGGATGATGATGGTGAGGATAAAACAGGAGAAAGTAGCCCCATTTCAAGTGATTTGACTCTAGAAACTGTAGGTGATCCACTGAACCAAAATGGGTTTCTTGACTCAATTGAGAACAGGTTTGAGTTCAATACAAGTCCAGCTAGAGACAGAGAAATGACAGAGATGTTCTTGTCAAAGACCAAAGGGTCTTTTGAGGATGTTTGTGGCAAGCAGCATGTGGTGAATTTTACTGTAGATGAGAGGGTGATTGAGGGTGTGCGTGTTGGGTGTGGTTCTTTTACTAACAGCTTGTTTGAGAAGTGGCTGAAAGACATTTTTCAAAGCAGCTTAGAAACGGTTAACATTGGAGGTGGGGATGGTATACTTTTTAGACTTTGTTGGGGTGGTAAAGGAGATAGGAAATTGGATAGGGGGTTCATGAGTTCACCTCTGCCCAAGAGCATCCAGGTTAACTACATGGGGTGA 3141 0.4514 MRSGGSCALQQTLTAEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRASSFRRACLKSQPPHQQQQPPPPSSSSHPLQCRALELCFNVALNRLPTTPSPLIHSQPSLSNALIAALKRAQAHQRRGCIEQQQQQQQPPLLTIKVELEQLVISILDDPSVSRVMREAGFSSTAVKNNIEDLSSAPSVVFQCYNTSGGVFSSPCSPSTSESHRENYLINSSISNFRHAHHFLAAYSTSSSEFNPVLISPPKKAPVYPISTGAVSSYKDDVKLVLDILLRKKKRNTVIVGDSVTLTEGLVGELMGRFERSEVPDELKSTHFIKFQFTSGSLRDMKRDEIEVKLLELKTKVDAVASGGAIFYIGDLKWTAEEASLSGKEGGSQEGEVSGGYNPVDHLVSEMGKMFSECGTTSNASKVWLTATATYQTYMRCQMRQPSLEMQWAFQAVLVPSGGLGLSLHASSVLDSKMTMSQNPYNMLETKLLGNKEQQERLNCCEECASNYEKEAQFLRPGQKKMLPFWLQPHSNEANHQKDELTELRRKWNRLCQCLHQSKQPQNHWSNTLCSNNTWNGKIYPYNSSSSISFANNATKPTYSSNLVPRFRRQQSCTIEFNFSDKRQESEPVLGSLECMEGKEVKITLALGNGGSGETVENITDTTLRRAHVCKLLQENVPWHSETLPSIAEALVDSKSAKQSNNITWLFLQGNDSIGKRRLALAIAESVFGSADMLFHLDMLKKRESSMAPYSEMLAGALKTHQQLVVLIENVDFADAQFKKILDDGFQTGKFGNLRRSEENSGQKVIFILTSGGTTSNEEINEDFVMTLLLQVNESKPNLGAPCFGHKRRAEFDLFSKIKRPRIEEKEEPLLVSEQVMIKKKDFSRQSSFNTLDLNMKADEEDDDGEDKTGESSPISSDLTLETVGDPLNQNGFLDSIENRFEFNTSPARDREMTEMFLSKTKGSFEDVCGKQHVVNFTVDERVIEGVRVGCGSFTNSLFEKWLKDIFQSSLETVNIGGGDGILFRLCWGGKGDRKLDRGFMSSPLPKSIQVNYMG* 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2300 1046 Gene3D - 643 852 IPR027417 -
Dod05g2300 1046 MobiDBLite consensus disorder prediction 882 914 - -
Dod05g2300 1046 MobiDBLite consensus disorder prediction 57 77 - -
Dod05g2300 1046 Coils Coil 482 502 - -
Dod05g2300 1046 ProSiteProfiles Clp repeat (R) domain profile. 9 184 IPR004176 -
Dod05g2300 1046 Gene3D - 258 448 IPR027417 -
Dod05g2300 1046 PANTHER PROTEIN SMAX1-LIKE 5 1 1021 - -
Dod05g2300 1046 SUPERFAMILY Double Clp-N motif 13 179 IPR036628 -
Dod05g2300 1046 Pfam Clp amino terminal domain, pathogenicity island component 27 47 IPR004176 -
Dod05g2300 1046 Pfam Clp amino terminal domain, pathogenicity island component 145 181 IPR004176 -
Dod05g2300 1046 Gene3D - 10 184 IPR036628 -
Dod05g2300 1046 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1021 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2300 Dod-Chr5 49238574 49242762 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2300 - - gmx:100814376 1372.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2300 05 49238574 49242762 Dod05g2300 05 49238574 49242762 ECH
Dod05g2300 05 49238574 49242762 Dod03g1471 03 19453984 19458914 PCT