Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2294 ATGGCCACCGCCGAACCAATCCAGAACGGCACATCCAACGCCTCACTCCCTCTCCTATCGGGGTATGCCTCAGCCGCCGAACCACCTTCCACCACCGCTGCCGCCACAACCGCCGCAGCAGCCGCCACCACTCAATCTACCGTCTTAGACGACGCAAACCCCGCAACTGACGAACCCGAATCCGAGGCATCTCCGGCGCCTGAATCGGCGGCAACAGGCGCCGCAGCCACTACTCCGCCGGAGAAGCGGTGGCCGGGATGGCCCGGCCAGTGCGTGTTCCGTCTCATCGTGCCCGTGCTGAAGGTGGGGAGCATTATTGGGCGGAAGGGCGAGCTCATCAAGAAGACGTGCGAAGAGACTCGAGCTCGCATTCGCGTCCTTGACGGCGCCATCGGCACTACTGATCGAATCGTACTTATATCAGGGAAGGAAGACCCAGAGGCACCACTTTCTCCTGCAATGGATGCTGTAATAAGGGTTTTTAAACGTGTCTCAGGGATATCTGAAACAGATGGCGAGAACAAAGCATCAGGAGCTTCTGGGGTTACAGTTTTTTCTATCCGTTTATTGGTGGCATCAACACAGGCCATCAATTTGATTGGAAAGCAGGGCTCATTAATCAAATCGATACAGGAAAATACCGGTGCTTCTGTTAGAGTATTGTCAGGAGATGAGGTGCCATTTTATGCTGCTGCCGATGAGAGGATTGTAGAAATGCAAGGAGAAGCATTGAAGGTGCTTAAGGCCCTGGAAGCAGTAGTTGGGCACCTGAGGAAATTTTTGGTTGATCAAAGTGTTCTTCCTCTATTTGAGAAAACTTACAATGCAACAATCACCCAAGACCGTCAGGCAGATACCTGGGCTGACAAGCCATCATTGCATAGTGCATCACAGCCAAGCATTGTTGCTGATGTTCCTCTTTCAACAAAAAGGGATCCTCTTTTTGTTGAGCGTGAAAGTCAATTGGATTCATTACTCCCTTCCTCCTCGGTGTCACTATTTGGGCAAGATACTTCACTTTCTGGTCTTCGTTCTTCAGCTCTTAGTCGTGCTGGTGCTCCCATTGTTACTACGGTAATACAAACAATGCAAATACCACTGTCCTATGCAGAGGATATCATTGGTATACAAGGGACTAATATTGATTACATTCGCCGTACTAGTGGAGCCATATTGACTGTGCAGGAGAGCAGGGTGCCGGATGAAATCATTGTGGAAATAAAAGGCACCTCATCTCAGGTTCAGTTGGCACAGCAATTAATTCAGGAAGTTATAACTAATCACAAAGAACCTGCCGCTAGTGGTTACAGCAGGTTAGATGCAGGTCTGAGGTCCTCTTACTCTCAATTGGGCAGTTCATCATACTCCTCATCCTCATTGTCCTCACAACCCTACAGTGGATATGGATCTTCCGGTTTAGGAGGCTACAGTTCGTTCAGACTTTAA 1446 0.4965 MATAEPIQNGTSNASLPLLSGYASAAEPPSTTAAATTAAAAATTQSTVLDDANPATDEPESEASPAPESAATGAAATTPPEKRWPGWPGQCVFRLIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDGAIGTTDRIVLISGKEDPEAPLSPAMDAVIRVFKRVSGISETDGENKASGASGVTVFSIRLLVASTQAINLIGKQGSLIKSIQENTGASVRVLSGDEVPFYAAADERIVEMQGEALKVLKALEAVVGHLRKFLVDQSVLPLFEKTYNATITQDRQADTWADKPSLHSASQPSIVADVPLSTKRDPLFVERESQLDSLLPSSSVSLFGQDTSLSGLRSSALSRAGAPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQLAQQLIQEVITNHKEPAASGYSRLDAGLRSSYSQLGSSSYSSSSLSSQPYSGYGSSGLGGYSSFRL* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2294 481 CDD PCBP_like_KH 186 254 - -
Dod05g2294 481 Pfam KH domain 361 423 IPR004088 GO:0003723
Dod05g2294 481 Pfam KH domain 187 253 IPR004088 GO:0003723
Dod05g2294 481 Pfam KH domain 93 145 IPR004088 GO:0003723
Dod05g2294 481 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 83 145 IPR036612 GO:0003723
Dod05g2294 481 ProSiteProfiles Type-1 KH domain profile. 184 253 - -
Dod05g2294 481 CDD KH-I 360 422 - -
Dod05g2294 481 ProSiteProfiles Type-1 KH domain profile. 358 421 - -
Dod05g2294 481 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 79 470 - -
Dod05g2294 481 MobiDBLite consensus disorder prediction 22 84 - -
Dod05g2294 481 MobiDBLite consensus disorder prediction 22 52 - -
Dod05g2294 481 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 79 470 - -
Dod05g2294 481 Gene3D K Homology domain, type 1 357 432 IPR036612 GO:0003723
Dod05g2294 481 CDD PCBP_like_KH 92 161 - -
Dod05g2294 481 SMART kh_6 183 258 IPR004087 GO:0003676
Dod05g2294 481 SMART kh_6 357 426 IPR004087 GO:0003676
Dod05g2294 481 SMART kh_6 89 162 IPR004087 GO:0003676
Dod05g2294 481 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 180 266 IPR036612 GO:0003723
Dod05g2294 481 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 355 427 IPR036612 GO:0003723
Dod05g2294 481 Gene3D - 90 262 - -
Dod05g2294 481 ProSiteProfiles Type-1 KH domain profile. 90 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2294 Dod-Chr5 49176535 49181134 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2294 K21444 - gmx:100802089 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2294 05 49176535 49181134 Dod03g1460 03 19200368 19207605 PCT