Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1460 ATGGCCACCGCCACCGAACCCTCCCAAAACGGCACCGTCAAGCCCACCACCACCACCCACGCAAACCCTTCCAATCAGGAGAGCGACCCCACTCCACAACCTGAATCCGCCGCCACTCCGGCGGAGAAGAGATGGCCGGGTTGGCCGGGGGAGTGCGTGTTCCGGCTGATCGTTCCGGTGGGTAAGGTCGGCAGCATCATAGGGCGAAAGGGAGAGCTCGTCAAGAAGACCTGCGAAGAGACCCGCGCTCGCATTCGCGTCCTCGACGCCGCTCCCGGCACTCCCGATCGAGTTGTCCTGATAACAGGGAAGGAAGAGCCAGAGGCAGCTCTTTCCCCTGCAATGGATGCTACGATAAGGGTATTTAAGCGTGTCTCTGGGTTACCTGAAACTGACAGTGAGAATATAGGATCTGCTGGGGCTGTATTTTGTTCCGTCCGTTTGTTGGTGGCTTCAACACAGGCTATCAATTTGATTGGAAAACAGGGATCATCAATCAAATCTATACAAGAAAGTACTGGTGCTTCTATTAGAGTATTGTCAGTAGATGAGGTGAAATTTTATGCTGCTGCGGATGAGAGGGTTGTAGAACTGCAGGGAGAAGCCTTGAAGGTCCTTAAAGCTCTGGAAGCAGTAGTTGGACATCTAAGAAAGTTTTTGGTTGATCATAGTGTTCTTCCTCTATTTGAAAAAACTTACAATGCGCCAACCTCACAAGACCACCAAGCAGAGACCTGGTCTGACAAGTCATTGCAGCATACTGCTTCACAAACAAGCATTTTTGCTGATATTCCTCTTTCATCAAGAAGGGATTCTCTCTTTGCTGACCGTGAAAGTCATTTGGACTCTTTACTGCCTTCCTCCACTATTTCTATCTATGGGCAAGATTCACTTTCTGGTGTTCGGTCGTCAGCGCTTAGTCGTGTTGCTGCCCCTATTGTTACTACGGTTATACAAACAATGCAAATACCGTTATCGTATGCTGAGGACATCATTGGTATTCAAGGGACTAATATTGAATACATTCGTCGTACTAGTGGAGCCATATTGACCGTGCAAGAGAGCAGGGTGCCTGATGAAATTGTCGTGGAAATAAAAGGCACTTCGACTGAGGTTCAAATGGCACAACAATTGATTCAGGAAGTTATAAGCAACCACAAAGAACCTGTCACTAGCAGTTATAGCAGGTTAGATGCAGATCTGAGGTCTTCATACTCTAAATTGGGCAGTACATCACGCACCTCGGCTTCATTGTCTTCACAAGCTTACACTGGTTATGGAGCTTCTGGTTTAGGAGACTACACTGCTTTCAGACTTTAA 1320 0.4795 MATATEPSQNGTVKPTTTTHANPSNQESDPTPQPESAATPAEKRWPGWPGECVFRLIVPVGKVGSIIGRKGELVKKTCEETRARIRVLDAAPGTPDRVVLITGKEEPEAALSPAMDATIRVFKRVSGLPETDSENIGSAGAVFCSVRLLVASTQAINLIGKQGSSIKSIQESTGASIRVLSVDEVKFYAAADERVVELQGEALKVLKALEAVVGHLRKFLVDHSVLPLFEKTYNAPTSQDHQAETWSDKSLQHTASQTSIFADIPLSSRRDSLFADRESHLDSLLPSSTISIYGQDSLSGVRSSALSRVAAPIVTTVIQTMQIPLSYAEDIIGIQGTNIEYIRRTSGAILTVQESRVPDEIVVEIKGTSTEVQMAQQLIQEVISNHKEPVTSSYSRLDADLRSSYSKLGSTSRTSASLSSQAYTGYGASGLGDYTAFRL* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1460 439 Gene3D K Homology domain, type 1 315 389 IPR036612 GO:0003723
Dod03g1460 439 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 39 427 - -
Dod03g1460 439 MobiDBLite consensus disorder prediction 1 35 - -
Dod03g1460 439 ProSiteProfiles Type-1 KH domain profile. 51 118 - -
Dod03g1460 439 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 39 427 - -
Dod03g1460 439 CDD PCBP_like_KH 145 213 - -
Dod03g1460 439 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 311 385 IPR036612 GO:0003723
Dod03g1460 439 ProSiteProfiles Type-1 KH domain profile. 143 212 - -
Dod03g1460 439 ProSiteProfiles Type-1 KH domain profile. 316 379 - -
Dod03g1460 439 Pfam KH domain 319 381 IPR004088 GO:0003723
Dod03g1460 439 Pfam KH domain 146 212 IPR004088 GO:0003723
Dod03g1460 439 Pfam KH domain 54 107 IPR004088 GO:0003723
Dod03g1460 439 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 143 224 IPR036612 GO:0003723
Dod03g1460 439 MobiDBLite consensus disorder prediction 1 45 - -
Dod03g1460 439 CDD KH-I 318 380 - -
Dod03g1460 439 CDD PCBP_like_KH 53 122 - -
Dod03g1460 439 SMART kh_6 315 384 IPR004087 GO:0003676
Dod03g1460 439 SMART kh_6 50 123 IPR004087 GO:0003676
Dod03g1460 439 SMART kh_6 142 217 IPR004087 GO:0003676
Dod03g1460 439 Gene3D - 51 220 - -
Dod03g1460 439 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 45 106 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1460 Dod-Chr3 19200368 19207605 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1460 K21444 - gmx:100815466 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2294 05 49176535 49181134 Dod03g1460 03 19200368 19207605 PCT