Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2288 ATGGGAACCTTTCAGAGCTTCAGAAAGGCCTATGGAGCTCTCAAGGACTCAACCAAGGTTGGCCTAGCCAAGGTCAATAGCGAATACAAGGAATTGGACATTGCCATTGTAAAGGCCACCAGTCACGTGGAATATCCTCCCAAGGAACGTCATGTTACAAAAATATTCTATGCCACAGCAGCACATCAACCACGGGCAGATGTGGCATACTGCATACACGCTCTTTCCAAGAGACTTTCCAAGACAAGAAATTGGATAGTTGCAATAAAGACATTGATGGTGATTCATAGGCTTTTGAGAGAGGGTGATCCTACCTTCAGAGAGGACATTCTAAACTACTCACGAAGGGGGAACATTCTCCAAATATCCAATTTCAAAGATGAATCAAGCCCTCTCGCTTGGGATTGTTCTGCATGGGTCCGAACTTATGCACTATTTTTAGAAGACAGACTTGAATGTTTTAGAGTCCTTAAATATGACATAGAGTCTGAGCGCTTTACAAAACCAACAACATCAGCACCGGCTTCAACTAAGGCACATAGCAAAATAGGGATGCTTAGTAGTGATGAGCTGTTAGACCAGCTGCCTGCACTGCAGCAACTTCTACACCGCCTTGTTAGTTGTCAGCCCGAAGGAGCAGCTTACACCAATCACCTCGTACAGTATGCGTTGGCCCTGGTATTGAAAGAGAGCTTCAAGATATATTGTGCCCTCAACGATGGAATCATAAATCTTGTGGATGTGTTCTTTGATATGCTGAAACATGATGCAATAAAGGCTCGACTTATTTATAAGAGAGCTGGCCAACAGGCTCATCATCTTGCTGACTTCTACGAATACTGCAAGGGCTTGGACCTTGCTAAGAGTTTCCAATTCCCAACTTTGAGACAGGAGTATAAGGAAAATGATTATTCACTTCGGAAAGAAGAACCAGAAACCGAAGAACCTGAAGCAACTCAAGAAAATGAGAAACAAGATGAAGGAGTCATCGAAGAAGAACCTGAAACACGGCTTAAGGAAGAGGCGGCTGAACCCCCTCCTCTTATATCAATTAGTGATGATACACATGATTTGCTGGGTCTAAACGAAGTAAATCCAAAAGCTGTAGAACTAGAGGAAAACAATGCTTTGGCGCTTGCGATTGTACCCCTGGCTGGAAACCATTCGAGAGATCTTTCTTTGAGTAACAATGGTGGGACTACTGGTTGGGAACTTGCACTGGTTACAACACCAAGTAACCATACCAGCCAAGCCACAGACCGCAAAATGGCTGGCGGGTTTGACAGGCTACTACTAGACAGTTTGTATGAAGATGAAAAAGCCAGGAGACAAATTCAACTCCAAAATGCAGGTTATGGATATGGGGGAACGCCCATACATAACCCATTTGATCATCATTACAATCAGCAGCATGATCCATTTGCAGTGTCCAGCAACACAGCACCTCCACCCAATGTGCAAATGGCATTAATGACTCAGCAACAGCAACAGCATCATCAAATGATGTATCAGCAGCAACAAATGATGTTCCCACAACAGCAGCAGCAACAGCAAATGATGTACCAACAATACAACATGATGATGGTCCCTTACCAGCAGCAGCCATCATATAGTCAACACCCTCAACAGATCCAAGTTATGGGTTCGTCTAATCCATTTGGAGATCACTTGCCCATTCCCAGCTATCATCAAAGTTCCATGCCCCCTCAAGGAAATTACAAGTTAATGTAG 1731 0.4391 MGTFQSFRKAYGALKDSTKVGLAKVNSEYKELDIAIVKATSHVEYPPKERHVTKIFYATAAHQPRADVAYCIHALSKRLSKTRNWIVAIKTLMVIHRLLREGDPTFREDILNYSRRGNILQISNFKDESSPLAWDCSAWVRTYALFLEDRLECFRVLKYDIESERFTKPTTSAPASTKAHSKIGMLSSDELLDQLPALQQLLHRLVSCQPEGAAYTNHLVQYALALVLKESFKIYCALNDGIINLVDVFFDMLKHDAIKARLIYKRAGQQAHHLADFYEYCKGLDLAKSFQFPTLRQEYKENDYSLRKEEPETEEPEATQENEKQDEGVIEEEPETRLKEEAAEPPPLISISDDTHDLLGLNEVNPKAVELEENNALALAIVPLAGNHSRDLSLSNNGGTTGWELALVTTPSNHTSQATDRKMAGGFDRLLLDSLYEDEKARRQIQLQNAGYGYGGTPIHNPFDHHYNQQHDPFAVSSNTAPPPNVQMALMTQQQQQHHQMMYQQQQMMFPQQQQQQQMMYQQYNMMMVPYQQQPSYSQHPQQIQVMGSSNPFGDHLPIPSYHQSSMPPQGNYKLM* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2288 576 Gene3D ANTH domain 176 328 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Dod05g2288 576 PANTHER CLATHRIN ASSEMBLY PROTEIN 300 507 IPR045192 GO:0048268|GO:0072583
Dod05g2288 576 SUPERFAMILY ENTH/VHS domain 31 162 IPR008942 -
Dod05g2288 576 MobiDBLite consensus disorder prediction 547 576 - -
Dod05g2288 576 SUPERFAMILY GAT-like domain 182 297 - -
Dod05g2288 576 MobiDBLite consensus disorder prediction 301 354 - -
Dod05g2288 576 SMART enth_2 30 161 IPR013809 -
Dod05g2288 576 MobiDBLite consensus disorder prediction 322 342 - -
Dod05g2288 576 Gene3D - 5 161 IPR008942 -
Dod05g2288 576 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Dod05g2288 576 PANTHER CLATHRIN ASSEMBLY PLANT-LIKE PROTEIN 1 297 - -
Dod05g2288 576 PANTHER CLATHRIN ASSEMBLY PLANT-LIKE PROTEIN 300 507 - -
Dod05g2288 576 Pfam ANTH domain 31 297 IPR011417 GO:0005543
Dod05g2288 576 CDD ANTH_N 32 154 - -
Dod05g2288 576 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 297 IPR045192 GO:0048268|GO:0072583
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2288 Dod-Chr5 49077031 49082069 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2288 K20044 - gmx:100786060 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2288 05 49077031 49082069 Dod03g1455 03 19148221 19153252 PCT