LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod05g2286	ATGCCTCCATCTCTGATTGTTCCGCCTTTGCCGGAAGAATCGTCGTCGGTGCCATCGCCTTTGAGCTCCGGCGGCGTTTCTTGGCCGGAAAATCGGCGATTCGGAGATCTCAGAGGTTTGCAGTGGCGTATGAGTCTCGGGGTTTTGCCGTCTTCGAGTTCCATTGATGATCTTCGTCGCGCCACCGCTGATTCTAGAAGGAGGTATGCTAGTTTGAGAGGGCGCCTCCTGGTTGATCCACATATTCCAAAAGATGGAAGTAGTCCACCCAATCTTGTCATGGACAACCCACTTTCACAAAATCCAGACAGTACATGGAGTCGCTTTTTTCGAAATGCGGAGCTGGAGAGGATGGTTGATCAGGACTTATCTCGTTTATACCCAGAACATGGCAGCTACTTCCAGACACCAGGATGCCAAGGCTTATTGAGACGGATTTTATTAATATGGTGTCTTAGACACCCAGAGTGCGGTTATAGACAGGGAATGCATGAGTTACTTGCCCCACTGCTTTATGTTCTCCAAGTTGATGTGGAATGCCTTTCAGAAATACGAAAGACTTATGAAGATCACTTCACAGACAGATTTGATGGCCTTTTCTGTCAAGAGAATGATCTTCCTTACAGCTTTGATTTTAGAAAATCTTCAGACTCGGAGGATGAAATTGGTTCCTGTGGAAATGGATCGAAAATCAAGAGTCTCGATGAGCTTGATCCTAAAATACAGGCCATTGTATTGCTAGGTGACGCTTATGGGGCTGAAGGGGAGCTCGGCGTTGTTTTATCTGAGAAATTCATGGAACATGATGCTTACTGTATGTTTGATGCATTAATGAATGGTGCTCGTGGTTCAGTTGCAATGGCCAATTTTTTCTCGTATTCCCCTGTAGCTGGTTCCCATACTGGCTTGCCTCCTGTAATTGAGGCTTCTACTGCATTGTATCATTTGTTGTGTCATGTTGATTCATCGCTGCACAGCCATCTTGTTGATCTTGGGGTTGAACCACAGTATTTTGCTCTCCGCTGGTTGCGAGTTTTATTTGGACGGGAATTTTCACTTGACAACCTCTTGATCATCTGGGATGAGATCTTTTTATCAGATAATAGTAAAGTGGAAAAGCACACCGATAACAACACAGATTCTGGTTTCATGATCTTACATTCATCTCGTGGAGCATTTATCTCAGCTATGGCTGTAGCAATGTTACTTCATTTAAGGTCTTCACTACTCGCAACTGAAAATCCTACAATCTGTCTCCAGAGGTTATTAAACTTCCCTGAGAGCACTAATATTAAAAAACTACTGGAGAAGGCTAAATCTTTGCAGGCTCTTGCACTGAGTACTGACATTTCATCCTCAACGCCTTCATTTGTGGGGTTTCATAACCGAGGTAAATCAAGTATTACAAGATCTATTAACCTTCCATCTGAATCAGTTTCTCCAAAAACTCCTCTGAATTTGTTAACCGATAGCTACTGGGAAGAAATGTGGAGAGTTGCCCACAGGGATGAAGAGCTTAAGCAAGATGGAGTGGACAATAAGGTTCCAACTCAGAAAAAGAGATGGACAGAAAAGGTAAAGTTCAGTTTAAAAAGAGCAGAATCTGACCCTTCATCATCAAAGATTAAGAGTGGTAAAAGGGAATCCAAGGAAACTATTAGGCGTAGTTTGTTAGAAGATCTTAGTAAGGAACTTGACTCACATGAAGATACAGAAAACCTGCATTGTCATGATATTATATGCCAGCAGGATAATCGTTCTGTAGCAGGTGAAGTCGAGCAACAAAACCTGCACAGTCATGATATTATATGCCATCAGGATAATCTTTCTGTAGCAGATGAAGTGGAGCAACAAAACCTGCAGAGTCATGATATTAAATGCCAGCAGGATAATCGTTCTGTAGCTAGTGAAGTGGAGCAACAAAATCTGCACTGTCATCGTGATATTATATGCCAGCAGGATAATCATTCTGTAGCAGGTGAAGTGAAGCAACAAGATGATGGCTCCGAAGGCAGCAGCAATTGCTTTGCTGAGGATAGACGTCTACGTGTAAACACTGGCAGGGAAGAAAATTCATCTATGCTTTCTGGCCCAGCTAGTTCTCCTAATGGGGCCTATGATTGCAGAAATGACTCCGAGAAGAGTAGTGTTGGGTCTAATTTATCCCTTGATGAAATTAATGAAATTTCACAGAGTAGTCCCATTGATTCACCTCTTCCCGTCTCTGATCATCCTGAGAACTTCTCTCAGATGTCAGGGCACAACAATGATTCCACTGGAAATTCAGCTGCACAATCTAAGGAGAGAAAACTGAATAAATTCCAGTGGTTTTGGAGGCTTGGGCGAAACAGTGGCGAACCTTTGCCTGGGAAAGGTGGAGGTGCTTCTGAGGCTGTAAAACCTGCCAATTGTGATAATCAAAGTGATGTGATACCTTCCTCTACTGCTGATGGGCATTGTAGTTCTGTTAGTTGCAAAGGGGATTCAGCTGACCAGAATGTGACGGGCACTTTGAGGAATATTGGGCAGTCTATGCTTGAGCATATTCAGGTTATCGAGTCTGCTCTTCAACAAGACCGGGGCCAGGGAGCTTCAGTGGATAACCTGTCTAAAAATGTTCTGGTTGGTAAAGGGCAGGTTACTGCAATGACAGCTCTCAAGGAGCTTCGCAAAATTAGCAATCTTTTGTCTGAGATGTGA	2700	0.4344	MPPSLIVPPLPEESSSVPSPLSSGGVSWPENRRFGDLRGLQWRMSLGVLPSSSSIDDLRRATADSRRRYASLRGRLLVDPHIPKDGSSPPNLVMDNPLSQNPDSTWSRFFRNAELERMVDQDLSRLYPEHGSYFQTPGCQGLLRRILLIWCLRHPECGYRQGMHELLAPLLYVLQVDVECLSEIRKTYEDHFTDRFDGLFCQENDLPYSFDFRKSSDSEDEIGSCGNGSKIKSLDELDPKIQAIVLLGDAYGAEGELGVVLSEKFMEHDAYCMFDALMNGARGSVAMANFFSYSPVAGSHTGLPPVIEASTALYHLLCHVDSSLHSHLVDLGVEPQYFALRWLRVLFGREFSLDNLLIIWDEIFLSDNSKVEKHTDNNTDSGFMILHSSRGAFISAMAVAMLLHLRSSLLATENPTICLQRLLNFPESTNIKKLLEKAKSLQALALSTDISSSTPSFVGFHNRGKSSITRSINLPSESVSPKTPLNLLTDSYWEEMWRVAHRDEELKQDGVDNKVPTQKKRWTEKVKFSLKRAESDPSSSKIKSGKRESKETIRRSLLEDLSKELDSHEDTENLHCHDIICQQDNRSVAGEVEQQNLHSHDIICHQDNLSVADEVEQQNLQSHDIKCQQDNRSVASEVEQQNLHCHRDIICQQDNHSVAGEVKQQDDGSEGSSNCFAEDRRLRVNTGREENSSMLSGPASSPNGAYDCRNDSEKSSVGSNLSLDEINEISQSSPIDSPLPVSDHPENFSQMSGHNNDSTGNSAAQSKERKLNKFQWFWRLGRNSGEPLPGKGGGASEAVKPANCDNQSDVIPSSTADGHCSSVSCKGDSADQNVTGTLRNIGQSMLEHIQVIESALQQDRGQGASVDNLSKNVLVGKGQVTAMTALKELRKISNLLSEM*	900

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod05g2286	899	MobiDBLite	consensus disorder prediction	533	553	-	-
	Dod05g2286	899	PANTHER	YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN	746	826	-	-
	Dod05g2286	899	SMART	tbc_4	26	413	IPR000195	-
	Dod05g2286	899	PANTHER	YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN	2	521	-	-
	Dod05g2286	899	MobiDBLite	consensus disorder prediction	731	766	-	-
	Dod05g2286	899	Gene3D	-	306	449	-	-
	Dod05g2286	899	MobiDBLite	consensus disorder prediction	1	15	-	-
	Dod05g2286	899	MobiDBLite	consensus disorder prediction	673	687	-	-
	Dod05g2286	899	Pfam	Rab-GTPase-TBC domain	266	368	IPR000195	-
	Dod05g2286	899	Pfam	Rab-GTPase-TBC domain	116	202	IPR000195	-
	Dod05g2286	899	PANTHER	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	746	826	-	-
	Dod05g2286	899	PANTHER	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	2	521	-	-
	Dod05g2286	899	ProSiteProfiles	TBC/rab GAP domain profile.	32	367	IPR000195	-
	Dod05g2286	899	MobiDBLite	consensus disorder prediction	1	28	-	-
	Dod05g2286	899	MobiDBLite	consensus disorder prediction	688	718	-	-
	Dod05g2286	899	SUPERFAMILY	Ypt/Rab-GAP domain of gyp1p	36	327	IPR035969	-
	Dod05g2286	899	SUPERFAMILY	Ypt/Rab-GAP domain of gyp1p	303	442	IPR035969	-
	Dod05g2286	899	Gene3D	putative rabgap domain of human tbc1 domain family member 14 like domains	99	283	-	-
	Dod05g2286	899	MobiDBLite	consensus disorder prediction	661	718	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod05g2286	Dod-Chr5	49062818	49068058	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod05g2286	K18469		-	gmx:100816501	1107.82

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod05g2286	05	49062818	49068058	Dod03g1452	03	19119276	19124074	PCT