LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod03g1452	ATGATCATGCCACCGGCCCTGGTGGACTCGATGTTTCAGCCTCAGTCGCCGTCGACGCCGGCGCCTTCGAGCTCCGGTGATGATTCTCGGAGATCCGCGCCGGAGAATCGGCGATTCGGCGATCTCAGAGGATTGCAGTGGCGTATAAATCTTGGAGTGTTGCCGTCTTCGTCTTCAACTTCTATCGATGATCTTCGTAGGGTTACCGCTGATACCAGAAGAAGGTATGCGAGTTTGAGAAGGCGCCTCCTTGTTGAACCAATTCCAAAGGATGGAAGTAATTCGCCCGATCTTGTCATGGACAATCCGCTTTCACAAAATCCAGATAGTACATGGAGTCGCTTCTTCAGGAATGCAGAGCTAGAGAGAATGGTTGATCAGGATTTATCACGTTTATACCCAGAACATGGGAATTATTTCCAGACTCCAGGATGCCAAGGCATGCTAAGACGCATTTTATTACTATGGTGTCTCAGGCATCCAGAGTGTGGTTATAGACAAGGAATGCACGAGTTACTTGCCCCTTTGCTTTACGTTCTCCAAGTCGATGTAGAGCGTCTTTCAGAAGTTCGAAAGCTTTATGAAGATATCTTCACGGATAGATTTGATGGCCTTTTATGTCAAGAAAATGATCTTTCTTACAGCTTTGATTTTAAGAAATCTCCAGACGTTATGGAGGATGAAATTGGCTCCCATGGAAATGCAATGAAAGTCAAAAGTCTTGATGAGCTGGATCCTGCAATACAGACCATTGTATTGCTAAGTGATGCTTATGGAGCTGAAGGTGAACTGGGCATTGTTCTATCTGAGAAATTCATGGAACATGATGCTTATTGTATGTTTGATGCTCTAATGACTGGTGTCCGTGGTTTAGTTGCAATGGCCGACTACTTCTCTTCCTCCCCCATAGTGGGGTCCCATAGTGGCGTGCCGCCTGTGATTGAAGCTTCTTCTGCATTGTATCATTTATTGTCTCTAGTGGATTCATCACTTTATAGCCATCTTTTGGATCTTGGGGTTGAACCCCAATACTTTTCCCTCCGATGGTTGCGAGTTTTATTTGGGAGAGAATTTTCACTTGACAACCTCTTGATCATCTGGGATGAGATCTTTGCATCGGATAATAGTAAAGTGGAAAAAAGTGTTGACGATGACATAGACTGGGGTTTGAGGATCATGCATTCACCTCGTGGAGCATTTATCTTAGCTATGGCTGTTGCGATGTTGCTTCATTTAAGATCTTCACTACTTGCAACTGAAAATCCCACAACCTGTCTTCAGAGACTGTTAAACTTCCCTCAAAACATTAATATTGAAAAGCTACTAGAGAAGGCTACATCGTTGCAAGCTCATGCATTAAGTGTTGATATTTCATCTTCATCACCTTTGTTTCTAGAGTTTCATCACCAAAATAAATCGATGTTTACAAGATCTCAGATCCTTCCGACTGAATCTGTCTCCCCAAAAACTCCTCTGAGTTTGTTTCCTGATAGCTACTGGGAAGAAAAGTGGAGAGTAGCCCACGAGGCTGAAGAACGTAAGCAAGATGGTGTGGAAAAACAGGTTCCAACTCGGAAAAAGGGTTGGACAGAAAAGGTAAAGTTTAGTTTGAAAAGAACAGAATCTGACCCACCTCCATCAAGGATTAAGAGTGGCAAAAAGGAATCTAAGCCATCTGTTAGGCGCAGCTTATTGGAAGATCTTTGTAGGGCACTTGGCTCGGAGGAAGAAACAGAACAAATGGATCACCATGAAATCCTATGCGAGCAGGATAATCTGTCTGAAACAGTTGAAGTGGTGCGAAAAGATGATGACTGTAAAGGAAACAACAATTACTCTTCTGATGATAGATGCCCAACTGGAAATACTGGCAGTGAGGAATGCTTATCTCTATTTTCTGAGCCAACTAGTCCTCCTAATGAGGCCAATGATCACGAAATTACCTCAGATAGAAGTAGCGTTGCATCTAATTTATACCTTGAGGAATGCAATGAAACTGCAGATACCAGTCCCAGTGATTCCCCTCTTCCAGCCTCTGATCCTCCCGAAAGCATACCTCAGACATCAGGGGGCAATGATGTTGATGGATCTGAGAGCGTACCTCAGGTGTCAGGGTGCAATAATGACGATGCAGGAAATTCAGCCAAATGTGTTGAGAGAAAGCAGAACAGATTCCAGTGGCTTTGGAAATTTAGACGGAATACTGTTGAGGCTATATCGGAGAAAGTAGGAGGTACTTCCGAAGCTACAAAATCTGCCGACAGTTGCAGTAGCCAAAGTAATACACCGCCGCCTGTCTCTTCTACTGCCAGTGACCATTGTAGTTCTGTCAGTAGCAAAGGAGATTCTGGAGACCAGAATGTGATGGGCACTTTGAAGAATATTGGGCAGTCTATGCTTGACCACATTCAGGTGATTGAGTCTGTTTTCCAACAAGACCGGGGCCAAGGAGCCTCATCGGAGAACTTATCTAAAACTGTTCTTGTTGGCAAAGGGCAGGTTACTGCCATGGCTGCTCTCAAGGAGCTTCGGAAAATTAGCAATCTTTTGTCCGAGATGTGA	2562	0.4418	MIMPPALVDSMFQPQSPSTPAPSSSGDDSRRSAPENRRFGDLRGLQWRINLGVLPSSSSTSIDDLRRVTADTRRRYASLRRRLLVEPIPKDGSNSPDLVMDNPLSQNPDSTWSRFFRNAELERMVDQDLSRLYPEHGNYFQTPGCQGMLRRILLLWCLRHPECGYRQGMHELLAPLLYVLQVDVERLSEVRKLYEDIFTDRFDGLLCQENDLSYSFDFKKSPDVMEDEIGSHGNAMKVKSLDELDPAIQTIVLLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMTGVRGLVAMADYFSSSPIVGSHSGVPPVIEASSALYHLLSLVDSSLYSHLLDLGVEPQYFSLRWLRVLFGREFSLDNLLIIWDEIFASDNSKVEKSVDDDIDWGLRIMHSPRGAFILAMAVAMLLHLRSSLLATENPTTCLQRLLNFPQNINIEKLLEKATSLQAHALSVDISSSSPLFLEFHHQNKSMFTRSQILPTESVSPKTPLSLFPDSYWEEKWRVAHEAEERKQDGVEKQVPTRKKGWTEKVKFSLKRTESDPPPSRIKSGKKESKPSVRRSLLEDLCRALGSEEETEQMDHHEILCEQDNLSETVEVVRKDDDCKGNNNYSSDDRCPTGNTGSEECLSLFSEPTSPPNEANDHEITSDRSSVASNLYLEECNETADTSPSDSPLPASDPPESIPQTSGGNDVDGSESVPQVSGCNNDDAGNSAKCVERKQNRFQWLWKFRRNTVEAISEKVGGTSEATKSADSCSSQSNTPPPVSSTASDHCSSVSSKGDSGDQNVMGTLKNIGQSMLDHIQVIESVFQQDRGQGASSENLSKTVLVGKGQVTAMAALKELRKISNLLSEM*	854

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod03g1452	853	MobiDBLite	consensus disorder prediction	11	29	-	-
	Dod03g1452	853	MobiDBLite	consensus disorder prediction	683	711	-	-
	Dod03g1452	853	PANTHER	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	4	784	-	-
	Dod03g1452	853	SUPERFAMILY	Ypt/Rab-GAP domain of gyp1p	311	449	IPR035969	-
	Dod03g1452	853	MobiDBLite	consensus disorder prediction	1	37	-	-
	Dod03g1452	853	SUPERFAMILY	Ypt/Rab-GAP domain of gyp1p	41	334	IPR035969	-
	Dod03g1452	853	MobiDBLite	consensus disorder prediction	533	561	-	-
	Dod03g1452	853	Gene3D	-	313	455	-	-
	Dod03g1452	853	MobiDBLite	consensus disorder prediction	744	790	-	-
	Dod03g1452	853	MobiDBLite	consensus disorder prediction	745	790	-	-
	Dod03g1452	853	MobiDBLite	consensus disorder prediction	612	674	-	-
	Dod03g1452	853	ProSiteProfiles	TBC/rab GAP domain profile.	37	374	IPR000195	-
	Dod03g1452	853	Coils	Coil	62	82	-	-
	Dod03g1452	853	Pfam	Rab-GTPase-TBC domain	122	181	IPR000195	-
	Dod03g1452	853	Pfam	Rab-GTPase-TBC domain	273	374	IPR000195	-
	Dod03g1452	853	MobiDBLite	consensus disorder prediction	602	714	-	-
	Dod03g1452	853	PANTHER	YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN	4	784	-	-
	Dod03g1452	853	Gene3D	putative rabgap domain of human tbc1 domain family member 14 like domains	105	291	-	-
	Dod03g1452	853	SMART	tbc_4	29	420	IPR000195	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod03g1452	Dod-Chr3	19119276	19124074	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod03g1452	K18469		-	gmx:100812967	1185.24

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod05g2286	05	49062818	49068058	Dod03g1452	03	19119276	19124074	PCT