Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2274 ATGGCAACTGAGAGTCCAATCAGAATCTCAAAAGCTGGGGGACAATGGCCCTCTCTTAAGGAAGCTGCAACTTTTGGTCCATCGTCTCGTAACATGGTGACAGAGGATTTGGGCATACTTTTGAAGAGCCATGGGTTTCATGGCAGTAGAAAGGAGACGGTACCCAATCGCAGTGGCAGTGCACCTCCAAGCATGGAAGGCTCATTTCTGGCCACAGAAAACCTATTATCCCCTAAAACTGCTGAGAATGCGAGCTTGGAAACTTTGAACAGACCTATGCAAATATATGATAGCGGTAAAAGTTTTTTTCATTTGTCATGTGGGACTCTTGCAACGCACGAGGAGGAGTCTGAGGATAATTCACTTCAGCAGTCATATGATAGTGAGTTCAATAAGACTAGTGGAATATGGCATAGACAGGATGCCACTTCAGTGACATCTCAGCACAAAAATATGGAAGATTTTCCCCATACCATGTCACCTCTATATAATAAGTCTCCTGGAGTGGTGGATGAACTAATCGACTTAGATGCTGGTGCCAGTTCTTCGCATGACCCCCCTATCACTACACTTGATGCTACAAAACTTGTAGGTGCAGAAGATACAAGGCTGTCATCAACTTTTGATTCCCCTGCCCCCGTTGCAAATTCTTCATCAGTTGAATCCACAGGAAGCTTAGGCTTTAGTGACATAGATGTTACGGTTGTTGAGTCTCAACTAAGGGCTCTGAGTGTATCTAATCTACCAAATTCAGAAAGCCAGAGTTATGAAGATAAATTTAACAGCAGCTGCCAGAATAATATGATGCAACACCAGCAACACAACAATCCATGCAAAGTTCCTAGCACCAATTCACAAAGTGAAAATTATGCACATGTTAGTATGGAACAATTTTATCAAAATCCCAGCAAGCTCTCGTCTGATGAACAGCCATTACTGCAGTCATCGGGGTATACTCCTCCGCTGTATGCCACAGCAGCAGCTTATATGACCTCAGCAAATCCATTTTACACTAATTTGCAGGCCTCAGGCATATTTCCTCCACAATATGTAGGTGGATATACTTATAATCCGACAAATATTCCTCCATATATTTCTTCATACCCTCCTCATGGTGTGGCAGTTGTACCATTTGTTGATGGGGCTACTGGTTCCAATTTTACTCCACATGCACCAGGGGTTTCTACCGGGGGAAGCATTTCACATAGAGCTGAAATGGTACATTCAAAAAAGTTCCTCGGGCAATTTGGATATCCTCTACAGCCTTCTTTTGGTAATCCTATTTACATGCAATATCACCAGCAACCTTTTGTGGAGGGAAATAGTATTTCTGGCCATCCACTGGCACCGAGAGCAAGTGGAAGCCAAATTGGTTCTTTTGATTCACAAAAAAGGCCCAATACTGGTGCCTATTTGGATGAACAAAAATTGCATCATCAGAGAAGTGGTGCTAATTCGAACCCAAGTAGTGGTGGACTAATGGTTCCTAGTTATGTTGGACACCCACCAAGTATGGGCTTTGTAACGCAGTATCCAAGTTCCCCACTTTCTACTCCAGCATTGTCAGGATACTCAGAAAGCAGCCCTGGCCTTCTTGGAGGAAGGAATGAAATGAAACTTTCTCCAGCTTCTGGTAGAACTGGAGGTATGTCATCTAGATGGCAAGGTCAAAGAGCCTTTGAAAGTGGTCATGACCCAAAAATTGTTACTTTCCTTGAAGAGTTAAAATCTGGAAAAGGTCGCAGATTTGAGCTTTCTGATATCTTTGGACATATTATTGAATTTAGCACTGATCAGCATGGGAGCCGATTTGTACAGCAGAAGTTGGAAAGTTGTGGCATGGAAGAGAAGGCATTGGTGTTCAAAGAGGTTCTTCCACATGCTTCTAAATTAATGACTGATGTATTTGGTAACTACGTAATCCAGAAGTTTTTTGAGTATGGAAGCACTGAGCAGAGGAAGGAACTTGCAAATCAATTTGCTGGTCAGATACTGCCTTTAAGTCTGCAAATGTATGGTTGTCGTGTAATCCAAAAGGCACTTGAAGTCATTGATCTCGAACAGAAAGCTCAGATTGTTCATGAGCTAGATGGAAATGTTATGAGATGTGTTCGTGATCAAAATGGGAATCATGTAATACAGAAGTGCATTGAATCTATTCCGACCAAAAAAATTGGCTTTATAATATCTGCATTTCGTGGTCAAGTTGCTAGTCTATCTACGCATCCTTATGGTTGCCGAGTCATACAGAGAGTTCTTGAGCATTGCTCAGATGAGGTTGAATGTCAGTTTATTGTGGATGAGATCTTGGAGTCAGTTTGTGCACTTGCTCAGGACCAGTATGGTAATTATGTAACCCAGCATGTGCTGGAGAGAGGGAAACCTCAGGAGAGGAGACACATTATTAGCAAGCTTTCTGGACGTATTGTACAATTGAGCCAGCATAAGTTTGCATCCAATGTTGTTGAGAAATGTTTAGAGTACAGTGATGATGCGGAAAAGCAGTTATTAATTGCAGAGATTGTTGGGCATGATGAACAAGATAATTTATTGACAATGATGAAAGATCAATTTGCAAATTATGTGGTCCAGAAGGTTATTGAGATCTGTTCTGAAAATCAGAGAGCAACGATACTTTCTCGTATAAGAGTTCATGCTCATGCTTTGAAAAAATACACTTATGGAAAACACATTGTGGCTCGGTTTGAACAGCTGTTTGGAGAGAACCAAACGCCTGGATCATGA 2745 0.4179 MATESPIRISKAGGQWPSLKEAATFGPSSRNMVTEDLGILLKSHGFHGSRKETVPNRSGSAPPSMEGSFLATENLLSPKTAENASLETLNRPMQIYDSGKSFFHLSCGTLATHEEESEDNSLQQSYDSEFNKTSGIWHRQDATSVTSQHKNMEDFPHTMSPLYNKSPGVVDELIDLDAGASSSHDPPITTLDATKLVGAEDTRLSSTFDSPAPVANSSSVESTGSLGFSDIDVTVVESQLRALSVSNLPNSESQSYEDKFNSSCQNNMMQHQQHNNPCKVPSTNSQSENYAHVSMEQFYQNPSKLSSDEQPLLQSSGYTPPLYATAAAYMTSANPFYTNLQASGIFPPQYVGGYTYNPTNIPPYISSYPPHGVAVVPFVDGATGSNFTPHAPGVSTGGSISHRAEMVHSKKFLGQFGYPLQPSFGNPIYMQYHQQPFVEGNSISGHPLAPRASGSQIGSFDSQKRPNTGAYLDEQKLHHQRSGANSNPSSGGLMVPSYVGHPPSMGFVTQYPSSPLSTPALSGYSESSPGLLGGRNEMKLSPASGRTGGMSSRWQGQRAFESGHDPKIVTFLEELKSGKGRRFELSDIFGHIIEFSTDQHGSRFVQQKLESCGMEEKALVFKEVLPHASKLMTDVFGNYVIQKFFEYGSTEQRKELANQFAGQILPLSLQMYGCRVIQKALEVIDLEQKAQIVHELDGNVMRCVRDQNGNHVIQKCIESIPTKKIGFIISAFRGQVASLSTHPYGCRVIQRVLEHCSDEVECQFIVDEILESVCALAQDQYGNYVTQHVLERGKPQERRHIISKLSGRIVQLSQHKFASNVVEKCLEYSDDAEKQLLIAEIVGHDEQDNLLTMMKDQFANYVVQKVIEICSENQRATILSRIRVHAHALKKYTYGKHIVARFEQLFGENQTPGS* 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2274 914 Pfam Pumilio-family RNA binding repeat 808 841 IPR001313 GO:0003723
Dod05g2274 914 Pfam Pumilio-family RNA binding repeat 591 625 IPR001313 GO:0003723
Dod05g2274 914 Pfam Pumilio-family RNA binding repeat 849 882 IPR001313 GO:0003723
Dod05g2274 914 Pfam Pumilio-family RNA binding repeat 706 723 IPR001313 GO:0003723
Dod05g2274 914 Pfam Pumilio-family RNA binding repeat 663 696 IPR001313 GO:0003723
Dod05g2274 914 Pfam Pumilio-family RNA binding repeat 773 805 IPR001313 GO:0003723
Dod05g2274 914 Pfam Pumilio-family RNA binding repeat 628 657 IPR001313 GO:0003723
Dod05g2274 914 Pfam Pumilio-family RNA binding repeat 735 770 IPR001313 GO:0003723
Dod05g2274 914 ProSiteProfiles Pumilio RNA-binding repeat profile. 731 767 IPR001313 GO:0003723
Dod05g2274 914 ProSiteProfiles Pumilio RNA-binding repeat profile. 695 730 IPR001313 GO:0003723
Dod05g2274 914 ProSiteProfiles Pumilio RNA-binding repeat profile. 587 622 IPR001313 GO:0003723
Dod05g2274 914 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 567 906 IPR033133 GO:0003723
Dod05g2274 914 MobiDBLite consensus disorder prediction 47 67 - -
Dod05g2274 914 CDD Pumilio 582 901 IPR033712 GO:0003723
Dod05g2274 914 MobiDBLite consensus disorder prediction 53 67 - -
Dod05g2274 914 MobiDBLite consensus disorder prediction 441 467 - -
Dod05g2274 914 Gene3D - 568 911 IPR011989 -
Dod05g2274 914 SMART pum_5 695 730 IPR001313 GO:0003723
Dod05g2274 914 SMART pum_5 623 658 IPR001313 GO:0003723
Dod05g2274 914 SMART pum_5 659 694 IPR001313 GO:0003723
Dod05g2274 914 SMART pum_5 768 803 IPR001313 GO:0003723
Dod05g2274 914 SMART pum_5 731 767 IPR001313 GO:0003723
Dod05g2274 914 SMART pum_5 804 839 IPR001313 GO:0003723
Dod05g2274 914 SMART pum_5 587 622 IPR001313 GO:0003723
Dod05g2274 914 SMART pum_5 845 880 IPR001313 GO:0003723
Dod05g2274 914 SUPERFAMILY ARM repeat 573 902 IPR016024 -
Dod05g2274 914 ProSiteProfiles Pumilio RNA-binding repeat profile. 840 880 IPR001313 GO:0003723
Dod05g2274 914 MobiDBLite consensus disorder prediction 1 27 - -
Dod05g2274 914 ProSiteProfiles Pumilio RNA-binding repeat profile. 804 839 IPR001313 GO:0003723
Dod05g2274 914 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 52 906 - -
Dod05g2274 914 PANTHER PUMILIO HOMOLOG 6, CHLOROPLASTIC 52 906 - -
Dod05g2274 914 ProSiteProfiles Pumilio RNA-binding repeat profile. 659 694 IPR001313 GO:0003723
Dod05g2274 914 ProSiteProfiles Pumilio RNA-binding repeat profile. 623 658 IPR001313 GO:0003723
Dod05g2274 914 ProSiteProfiles Pumilio RNA-binding repeat profile. 768 803 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2274 Dod-Chr5 48869399 48877206 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2274 K17943 - gmx:100819166 1295.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2274 05 48869399 48877206 Dod03g1433 03 18789730 18802613 PCT