Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1433 ATGGCAACTGAGAGTCCAATTAGAATTTCAGAAGCTGGGGTTAAATGGCCCTCTCTTAAGGAAGCTGCGACTTTTGGTTCTCCGGCTCATAACATGGTGACAGAAGATTTGGGTATACTTTTAAAGGGGCATAGGTTCCATGGTGGTGGAAAGGATGTGGCACCGAATCGAAGTGGAAGTGCACCTCCCAGTATGGAAGGCTCATTTCTTGCTATAGAAAACCTATTATCCCAGCAGAACCCCACCCAGAATGCAAGCTTGGCAACCCTAAACAGAGCTATGCGAAAGTGCGAGTCTGAAGAACAATCACGAGCTGATCCTGCTTATGTGGCGTATTACAGTTCCAATGTCAACCTAAACCCTAGACTTCCTCCGCCGCTTACCTCCCGAGAAAGTCGCCATCAAATTGGTAGTTTTAGGAATAAATGGGGATTTTCTTCTGCAGATGATAGCAGTAAAAGTTCTTTACATTTGTCACAAGGGACTCTTGCAACACACAGGGAAGAGTCTGACGATGATTCACCCCAACAGCCATATGATAATGAGTTAGTTAAGACAAATGAAATATGGACTGGACCGGATACAGCTGCTTCATTACCAATGCAGCACAAAAATGTGGTTGACTTAATTCAGGAAGATTTTCCCCGTACCATGTCACCTGTATATAATATGTCTCATTCTGTAAGTCGTGGACTGATGGATGAACCAATTGACTTAGATGCTGGTTCAAGTACTTCTCATGACCCTCCTGTCACTACAGTAGAGGTTGCTAAACCTACTGTAGGCGCAGATGATATAAGGGTGTCATCAACTGTTGGTATCCATGCCCCTCTTGCAAGCTTATCATCTCTTGAATCCACAGGCAGCATAGGTTTTAGTGACTTAGATGTTTCAACTGTTGAGTCTCAACTAAAGGCTCTTAGTGTATCTAATCCACCAAATTCAGAAAGTCTAAGTTCTCAGAATAATTTAATTCAACCCCAGATATTTCAGCAACAAAACAATCTGCATGAAGTTCCCAATGCCAATCCTCAAAGTGTAAATTCTGCATATGCTGGTAGGGAACAGTTTCCTCATAATTCTAGCAAGTACTCCTCTGATGTCCAGCCCCTACTACAGTCATCTGGGTTTACACCTCCACTATATGCCTCGGCAGCAGCCTATATGACCTCAGCAAATCCATTTTACACTAGTTTGCAGGCCTCAGGCATATATACTCCACAATATGTTGGTGGATACACTTTAAATCCCACAGTTGTTCCTTCATACATTACTGCATACCCTCCGCATGGTGCTATACCATTTGTTGTCGATGGGGCTTCTAGTTCTAGTTATGCTCCGTTAACACCAGGGCTTTCTACTGGGGGAAGCATTTCTCATGGAACTGAAATGACAAATGCAAACAAGTTCCCTGGGCAATATGGATTTCCTCTGCAGCCGTCTTTTGGTGATCCTATGTTTATGCAATACCATCAACAACCTTTTGTCGAGGGATATGGTGTTTCTGGTCATTTTGATCCGCTGGCGCCCAGAGCAAGTGGCATTAACCATCCTTTTGATTCACAAAAGAGGCCCACTAGTGGTGCTTATTTGGGTGATAAAAAGTTACATGATCAGAGAACTGGTACTAATATGAACTCAAGAAGAGGTGGATTATTGATTCCTAGTTATCATGGACACGTGCCAAACATGGGTTTTGTAATGCAGTATCCAAGTTCATCCCTTCCGAGTCCAGATTTTTCAGGATACCCTGAAGGAAATCCTGGTCTTCCAGGTGGAAGGAATGAGATGAAACTTTCCCCAGCTTCTGGTAGAAATGGAGGGGTATTATCTGGATGGCATGGTCAGAGGTCCTTTGACAGTGCTCATGACCCCAAAATTGTTAATTTTCTTGAAGAGTTGAAATCTGGCAAAGGTCGCAGATTTGAGCTATCTGATATTATTGGACACATTGTTGAATTTAGTGCTGATCAGCATGGGAGTCGATTTATACAGCAGAAGTTGGAAAGCTGTGTTGTTGAAGAAAAGGCATTGGTGTTCAAAGAAGTTCTTCCTCATGCTTCCAAATTAATGACTGATGTATTTGGTAACTACGTCATACAGAAGTTTTTTGAGTATGGAAGCACTGAGCAGAGGAGGGAACTTGCTAATCGATTGGCTGGTCAGATATTGCCTTTAAGTCTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATCGAGCTTGAACAGAAAGCTCAGCTTGTTCGTGAGCTAGATGGAAATGTTATGAGATGTGTACGTGACCAAAATGGGAATCATGTAATACAGAAATGCATTGAATCTATTCCAACCAAAAAGATTGGCTTTATAATATCTGCATTTCGCGGTCAAGTTGCTAATCTGTCAATGCATCCCTATGGGTGTCGAGTCATACAGAGAGTTCTGGAGCATTGCACGGATGAGACACAATGTCAGTTTATTGTTGATGAAATCTTGGAGTCAGTTTATGCTCTCGCTCAGGACCAGTATGGTAATTATGTAACCCAGCATGTATTGGAGAGAGGAAAGCCTCAGGAAAGGAGCAAAATTATTAGCAAGCTATCAGGACATATTGTTCAATTAAGCCAGCATAAGTTTGCTTCAAATGTTGTTGAGAAGTGTTTAGAGCATGGTGATGCCACTGAACGGGAATTGTTAATTGCTGATATTATTGGGCATGATGGACAAAATGATAATTTATTGACCATGATGAAAGACCAATTTGCAAATTATGTGATCCAGAAGGTTATTGATATCTGTTCTGAAAATCAGCGAGCAATGTTACTCTCTCAGATAAGACTTCATGCCCATGCTTTGAAGAAATACACTTATGGAAAACACATTGTGGCTCGGTTGGAACAGCAATTCGGAGAGGATCAAACACCTAGATTGGGATGA 2928 0.4204 MATESPIRISEAGVKWPSLKEAATFGSPAHNMVTEDLGILLKGHRFHGGGKDVAPNRSGSAPPSMEGSFLAIENLLSQQNPTQNASLATLNRAMRKCESEEQSRADPAYVAYYSSNVNLNPRLPPPLTSRESRHQIGSFRNKWGFSSADDSSKSSLHLSQGTLATHREESDDDSPQQPYDNELVKTNEIWTGPDTAASLPMQHKNVVDLIQEDFPRTMSPVYNMSHSVSRGLMDEPIDLDAGSSTSHDPPVTTVEVAKPTVGADDIRVSSTVGIHAPLASLSSLESTGSIGFSDLDVSTVESQLKALSVSNPPNSESLSSQNNLIQPQIFQQQNNLHEVPNANPQSVNSAYAGREQFPHNSSKYSSDVQPLLQSSGFTPPLYASAAAYMTSANPFYTSLQASGIYTPQYVGGYTLNPTVVPSYITAYPPHGAIPFVVDGASSSSYAPLTPGLSTGGSISHGTEMTNANKFPGQYGFPLQPSFGDPMFMQYHQQPFVEGYGVSGHFDPLAPRASGINHPFDSQKRPTSGAYLGDKKLHDQRTGTNMNSRRGGLLIPSYHGHVPNMGFVMQYPSSSLPSPDFSGYPEGNPGLPGGRNEMKLSPASGRNGGVLSGWHGQRSFDSAHDPKIVNFLEELKSGKGRRFELSDIIGHIVEFSADQHGSRFIQQKLESCVVEEKALVFKEVLPHASKLMTDVFGNYVIQKFFEYGSTEQRRELANRLAGQILPLSLQMYGCRVIQKALEVIELEQKAQLVRELDGNVMRCVRDQNGNHVIQKCIESIPTKKIGFIISAFRGQVANLSMHPYGCRVIQRVLEHCTDETQCQFIVDEILESVYALAQDQYGNYVTQHVLERGKPQERSKIISKLSGHIVQLSQHKFASNVVEKCLEHGDATERELLIADIIGHDGQNDNLLTMMKDQFANYVIQKVIDICSENQRAMLLSQIRLHAHALKKYTYGKHIVARLEQQFGEDQTPRLG* 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1433 975 MobiDBLite consensus disorder prediction 146 163 - -
Dod03g1433 975 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 626 966 IPR033133 GO:0003723
Dod03g1433 975 CDD Pumilio 641 962 IPR033712 GO:0003723
Dod03g1433 975 PANTHER PUMILIO HOMOLOG 5 45 968 - -
Dod03g1433 975 SMART pum_5 790 826 IPR001313 GO:0003723
Dod03g1433 975 SMART pum_5 646 681 IPR001313 GO:0003723
Dod03g1433 975 SMART pum_5 863 898 IPR001313 GO:0003723
Dod03g1433 975 SMART pum_5 718 753 IPR001313 GO:0003723
Dod03g1433 975 SMART pum_5 682 717 IPR001313 GO:0003723
Dod03g1433 975 SMART pum_5 827 862 IPR001313 GO:0003723
Dod03g1433 975 SMART pum_5 905 940 IPR001313 GO:0003723
Dod03g1433 975 SMART pum_5 754 789 IPR001313 GO:0003723
Dod03g1433 975 ProSiteProfiles Pumilio RNA-binding repeat profile. 863 898 IPR001313 GO:0003723
Dod03g1433 975 Pfam Pumilio-family RNA binding repeat 722 755 IPR001313 GO:0003723
Dod03g1433 975 Pfam Pumilio-family RNA binding repeat 909 942 IPR001313 GO:0003723
Dod03g1433 975 Pfam Pumilio-family RNA binding repeat 765 782 IPR001313 GO:0003723
Dod03g1433 975 Pfam Pumilio-family RNA binding repeat 687 717 IPR001313 GO:0003723
Dod03g1433 975 Pfam Pumilio-family RNA binding repeat 832 864 IPR001313 GO:0003723
Dod03g1433 975 Pfam Pumilio-family RNA binding repeat 794 829 IPR001313 GO:0003723
Dod03g1433 975 Pfam Pumilio-family RNA binding repeat 867 901 IPR001313 GO:0003723
Dod03g1433 975 Pfam Pumilio-family RNA binding repeat 650 684 IPR001313 GO:0003723
Dod03g1433 975 ProSiteProfiles Pumilio RNA-binding repeat profile. 790 826 IPR001313 GO:0003723
Dod03g1433 975 Gene3D - 627 971 IPR011989 -
Dod03g1433 975 ProSiteProfiles Pumilio RNA-binding repeat profile. 718 753 IPR001313 GO:0003723
Dod03g1433 975 ProSiteProfiles Pumilio RNA-binding repeat profile. 899 940 IPR001313 GO:0003723
Dod03g1433 975 ProSiteProfiles Pumilio RNA-binding repeat profile. 827 862 IPR001313 GO:0003723
Dod03g1433 975 ProSiteProfiles Pumilio RNA-binding repeat profile. 754 789 IPR001313 GO:0003723
Dod03g1433 975 MobiDBLite consensus disorder prediction 515 548 - -
Dod03g1433 975 SUPERFAMILY ARM repeat 631 963 IPR016024 -
Dod03g1433 975 ProSiteProfiles Pumilio RNA-binding repeat profile. 646 681 IPR001313 GO:0003723
Dod03g1433 975 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 45 968 - -
Dod03g1433 975 ProSiteProfiles Pumilio RNA-binding repeat profile. 682 717 IPR001313 GO:0003723
Dod03g1433 975 MobiDBLite consensus disorder prediction 146 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1433 Dod-Chr3 18789730 18802613 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1433 K17943 - gmx:100780168 1574.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2274 05 48869399 48877206 Dod03g1433 03 18789730 18802613 PCT