Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1742 GATACTCTCTTGCTCACTGCTGTCATGGACTTGTATTCACAGTGTCAGCAATATGATGATGCGTGCAAGGTGTTTGATGAGATGCCCCAGAGGGATACCGTTGCTTGGAATGTGATGATCTCTTGCCTCATTCGTAATAAACGGGGGGATGCTTTGAGTTTGTTTGATGTGATGCAGAGTTCAAGATATCATAAGTGTGAGCCTGATGATGTTACTTGTTTGCTTCTCCTTCAAGCTTGTGCTAATTTGAATGCCTTGGAATTTGGTGAACGAATTCATGGATATATCATGGAACACGGTTATGGGGGTGCTACCAATCTGTCTAATTCTCTCATATCTATGTATTCGAGGTGTGGTTGTTTGGATAAGGCTTATGAGGTCTTCAAGGGAATGCGTAATAAAAGTGTCGTTTCATGGAGTGCAATGATCTCTGGTTTGGCAGTGAATGGATATGGGCAAGAAGCTATCAAAGCATTTGAAGAGATGCAGAGAATGGGGATTAGGCCTGATGATCAGACATTCACTGGAGTCCTTTCTGCTTGCAGTCATACTGGATTGGTTAATGAGGGAATGTCTTTTTTCAACCGTATGAGCAGAGAGTTTGGAATAACTCCCAACATCCATCATTATGGATGCATGGTTGATCTCTTGGGTCGTGCTGGTCTACTGGATAAGGCCTATCAGCTTATTACCACAATGGAGGTGAAGCCGGATTCGACAATATGGAGGACCTTGCTTGGAGCTTGCAGAATTTGTGGCCGTCTTACACTTGGGGAACGAGTAATTGAACACTTGATTGAAATGAAAGCTCAAGAAGCTGGGGATTATGTTTTGCTCCTAAATATTTATTCTTCAGCTGGTCACTGGGACAAGGTAGCAGAAGTGAGAAAACTAATGAAAGAAAAAGCAATACAAACCACACCCGGTTGTAGCACCATTGAATTAAAAGGAATAGTACATGAGTTTGCTGTTGATGATATTTCAAATCCGAGAAAGGGTGAGATTTATGAGACAATGGACGAGATTAATAAGCAGCTGAAGATTGCAGGTTATGTTGTTGAACCTTCGTCTGAGTTACATAAGATGGATGACAAAGAAAAGGGATATATGCTCTCTTATCACAGTGAAAAATTGGCTACTGCTTTTGGGGTTCTTTCTACTCCACCAGGCACAGCACTAAGAGTTGCCAATAATCTCCGCATATGTGTTGATTGCCACAACTTTCTGAAAACTTTTTCCTGGGTTTACAACCGTGATGTGGTGCTTAGGGACCATAATCGGTTTCACCACTTCCGGGGAGGGCGCTGCTCCTGTAACGATTATTGG 1326 0.4246 DTLLLTAVMDLYSQCQQYDDACKVFDEMPQRDTVAWNVMISCLIRNKRGDALSLFDVMQSSRYHKCEPDDVTCLLLLQACANLNALEFGERIHGYIMEHGYGGATNLSNSLISMYSRCGCLDKAYEVFKGMRNKSVVSWSAMISGLAVNGYGQEAIKAFEEMQRMGIRPDDQTFTGVLSACSHTGLVNEGMSFFNRMSREFGITPNIHHYGCMVDLLGRAGLLDKAYQLITTMEVKPDSTIWRTLLGACRICGRLTLGERVIEHLIEMKAQEAGDYVLLLNIYSSAGHWDKVAEVRKLMKEKAIQTTPGCSTIELKGIVHEFAVDDISNPRKGEIYETMDEINKQLKIAGYVVEPSSELHKMDDKEKGYMLSYHSEKLATAFGVLSTPPGTALRVANNLRICVDCHNFLKTFSWVYNRDVVLRDHNRFHHFRGGRCSCNDYW 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1742 442 Gene3D Tetratricopeptide repeat domain 1 94 IPR011990 GO:0005515
Dod05g1742 442 TIGRFAM PPR: pentatricopeptide repeat domain 109 137 IPR002885 -
Dod05g1742 442 TIGRFAM PPR: pentatricopeptide repeat domain 6 32 IPR002885 -
Dod05g1742 442 TIGRFAM PPR: pentatricopeptide repeat domain 137 170 IPR002885 -
Dod05g1742 442 TIGRFAM PPR: pentatricopeptide repeat domain 173 207 IPR002885 -
Dod05g1742 442 Pfam E motif 257 314 IPR046848 -
Dod05g1742 442 Gene3D Tetratricopeptide repeat domain 110 340 IPR011990 GO:0005515
Dod05g1742 442 Pfam PPR repeat family 32 82 IPR002885 -
Dod05g1742 442 Pfam PPR repeat family 134 182 IPR002885 -
Dod05g1742 442 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 427 - -
Dod05g1742 442 Pfam PPR repeat 6 31 IPR002885 -
Dod05g1742 442 Pfam DYW family of nucleic acid deaminases 350 442 IPR032867 GO:0008270
Dod05g1742 442 PANTHER BNAA06G20590D PROTEIN 1 427 - -
Dod05g1742 442 Pfam PPR repeat 202 234 IPR002885 -
Dod05g1742 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 205 IPR002885 -
Dod05g1742 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1 35 IPR002885 -
Dod05g1742 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 135 169 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1742 Dod-Chr5 42852366 42853695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1742 7 442 Glycoside Hydrolase AT3G49170 38.409 5.04e-113 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1742 - - lja:Lj0g3v0169319.1 775.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1742 05 42852366 42853695 Dod05g1742 05 42852366 42853695 ECH
Dod02g1650 02 20509680 20512350 Dod05g1742 05 42852366 42853695 PCT