Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1650 ATGGCATCACCCATTCTACAACTCACCCCGCACTCTCCCACAAGGCCCGAACCCACAACAGCACTTGCACCCTTCCCACACCTTCTTTCCCTCGTACCCAAATGCACCTCTCTTAGAGAGCTCAAGCAGATACAAGCCTACACCATCAAAACCCACCTCCAAAATGACCTCACTGTCCTCGCAAAGCTCATCAATTTCTGCACCGCGAGCCCTACACGCGATTCAATGGTCCATGCCCACCGTGTGTTCGACCGAATTACTGAACCAGACATTGTCCTTTTCAACACCATGGCACGTGGCTATGCACGCTCTGATGACCCTCTTAGAGCAGTTATGCTGTTTCCTCAGGTGTTTCGCTTTGGCATCCTTCCGGATGGTTACACATTTTCCTCACTCTTCAAGGCATGTGCAAGGGTTAAGGCCTTGCGGGAAGGTAAACAACTGCATTGCCTTGCTGTGAAGCTTGGTGTCAGCGGTGATATGTATGTTTGCCCAACATTGATGAACTTGTACACTGCTTGTAATGATGTGGATGCTGCTAGAAGGGTATTTGACAAGGTTGATGAACTGTGTGTCGTCGCGTATAATGCTATGATTACTAGTTATGCTAGGAGTAGTCAGCCCAATGAGGCACTGGCTTTGTTCAGGGAATTGCAGGAGAATGGACTTAGGCCTACTGATGTCACCATGCTTGTTGCGCTCTCGTCCTGTGCTTTGTTGGGTTCGTTGGACTTGGGCAGGTGGATACATGAATATGTCAAGAAGAATGGGTTTGATCGGTATGTGAAGGTGAATACTGCGCTTATTGATATGTATGCAAAGTGTGGGAGTTTGGATGATGCGGTTTCAGTGTTTAGGGACATGAGTAGGAGAGACACGCAGGCTTGGTCAACGATGATTGTTGCTTATGCAACTCATGGGCATGGCTCCCTTGCCATATCAATGTTGGAAGAAATGAAGAAGGAAAAAGTGCAGCCTGATGAGATAACTTTTTTAGGCGTGTTGTATGCTTGCAGTCACAATGGATTGGTAGAGGAAGGTTATGAGTATTTCCATAGCATGACTGATGAGTATGGAATTGTTCCTAATATCAAGCATTATGGGTGTATGGTGGATTTGCTTGGCCGAGCTGGACGACTGGATGAAGCCTATAAATTCATAGACGAGTTACCAATTAAGCCAACCCCAATTCTCTGGAGGACATTGCTATCTGCTTGTAGCAGTCATGGAAATGTTGAAATGGGTAAGCAAGTGATTGAGAGAATCTTTGAATTGGATGATTCACATGGTGGGGATTATGTCGTTTTGTCAAACTTGTGTGCGAGATATGGAAGATGGGATGATGTCAATTTCTTTAGGAAAAAGATGGTAGACAAAGGAGCAGTGAAAATTCCTGGATGTAGCTCTATAGAGGTCAACAATGTTGTGCATGAATTCTTCTCTGGGGATGGAGTTCATTCCACTTCGACCGCATTACACTCTGCGCTTGATGAGTTGGTAAAGGAATTGAAGCTTGCAGGGTATGTACCTGACACATCTCTAGTGTTTCATGCAGACATGGATGATGAAGAGAAGGAAATTATTCTTAGATATCACAGTGAGAAATTGGCCATTTCTTTTGGTCTTCTAAATACACCCCCTGGAACAACAATTCGTGTGGTCAAGAACCTTCGGGTCTGTGGGGATTGCCATAGTGCTGCTAAATATATATCATTCATCTTTGGAAGGCAAATTATACTTAGAGATGTCCAGCGATTTCATCATTTCAAAGATGGGAAATGCTCCTGTGGAGATTACTGGTAG 1803 0.4487 MASPILQLTPHSPTRPEPTTALAPFPHLLSLVPKCTSLRELKQIQAYTIKTHLQNDLTVLAKLINFCTASPTRDSMVHAHRVFDRITEPDIVLFNTMARGYARSDDPLRAVMLFPQVFRFGILPDGYTFSSLFKACARVKALREGKQLHCLAVKLGVSGDMYVCPTLMNLYTACNDVDAARRVFDKVDELCVVAYNAMITSYARSSQPNEALALFRELQENGLRPTDVTMLVALSSCALLGSLDLGRWIHEYVKKNGFDRYVKVNTALIDMYAKCGSLDDAVSVFRDMSRRDTQAWSTMIVAYATHGHGSLAISMLEEMKKEKVQPDEITFLGVLYACSHNGLVEEGYEYFHSMTDEYGIVPNIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSSHGNVEMGKQVIERIFELDDSHGGDYVVLSNLCARYGRWDDVNFFRKKMVDKGAVKIPGCSSIEVNNVVHEFFSGDGVHSTSTALHSALDELVKELKLAGYVPDTSLVFHADMDDEEKEIILRYHSEKLAISFGLLNTPPGTTIRVVKNLRVCGDCHSAAKYISFIFGRQIILRDVQRFHHFKDGKCSCGDYW* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1650 600 Pfam PPR repeat 266 291 IPR002885 -
Dod02g1650 600 Pfam PPR repeat 359 389 IPR002885 -
Dod02g1650 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Dod02g1650 600 SUPERFAMILY TPR-like 258 429 IPR011990 GO:0005515
Dod02g1650 600 TIGRFAM PPR: pentatricopeptide repeat domain 295 328 IPR002885 -
Dod02g1650 600 TIGRFAM PPR: pentatricopeptide repeat domain 330 364 IPR002885 -
Dod02g1650 600 TIGRFAM PPR: pentatricopeptide repeat domain 193 226 IPR002885 -
Dod02g1650 600 TIGRFAM PPR: pentatricopeptide repeat domain 266 292 IPR002885 -
Dod02g1650 600 Pfam PPR repeat family 89 138 IPR002885 -
Dod02g1650 600 Pfam PPR repeat family 191 237 IPR002885 -
Dod02g1650 600 Pfam PPR repeat family 292 338 IPR002885 -
Dod02g1650 600 Pfam DYW family of nucleic acid deaminases 507 600 IPR032867 GO:0008270
Dod02g1650 600 Gene3D Tetratricopeptide repeat domain 194 355 IPR011990 GO:0005515
Dod02g1650 600 Gene3D Tetratricopeptide repeat domain 25 193 IPR011990 GO:0005515
Dod02g1650 600 Pfam E motif 409 471 IPR046848 -
Dod02g1650 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Dod02g1650 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 124 IPR002885 -
Dod02g1650 600 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 21 586 - -
Dod02g1650 600 PANTHER BNAA02G26650D PROTEIN 21 586 - -
Dod02g1650 600 Gene3D Tetratricopeptide repeat domain 356 509 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1650 Dod-Chr2 20509680 20512350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1650 28 600 Glycoside Hydrolase AT3G49170 39.347 4.86e-143 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1650 - - adu:107472407 1026.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1650 02 20509680 20512350 Dod05g1742 05 42852366 42853695 PCT