Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1585 ATGAAGGCAACACTACGATACTTGGCAGGAATTACTGGCCCTAGTGGCTTTGGCTCAAAATCAACTGCTGAGCAAGTCACTCAAGCTTGCTCTAATTCCTCATTGCTTCCTTCTAATCTTACCGCTCTCATCACTGGGGGGTCTTCTGGAATTGGAGCTGAAACAGCTAGGGTGCTAGCAAAGAGAGGAGTGAGAGTTGTGATTGCCGCAAGGGACCTGAAAAAGGCAAAGGATGTAATAGACAATATCCAAAAGGAGAGTCCAAACGCTGAGGTTATTCTTTTGGAGATTGATCTCAGCTCCTTTGCATCTATACAGAGATTTTGTTCTGAGTTTTTAGCTTTAGAACTGCCCCTCAATATTCTCATAAACAATGCAGGAGTATTCTCTCCAACTCTGGAGTTCTCTGAAGATAAATTTGAAATGACATTTGCTACGAATTACTTAGGACATTTTTTGCTCACAAAAATGCTCTTAGAGAAATTGATAGATACAGCAAATAAGACCGGCATTCAAGGGAGAATAATAAACGTTTCTTCCGTTATCCATAGCTGGGTCAGCAGAGGTGGTTTTCGTTTCAATGACATGCTCACCGGAAAAAATTATAATGGCACACGCGCATATGCTCAGTCAAAATTGGCCAATATCCTGCATGTGAAGGAAATGGCTAGACAGCTGAAGGCAAGGAATGCTAGAGTAACTATCAATGCAGTTCATCCTGGCATTGTGAAGACGGGAATTATTAGGGCTCATAAAGGCTTAATAACGGATTCACTGTTTTTCTTTGCATCAAAGTTACTCAAATCGATATCACAGGGTGCAGCAACGACGTGTTATGTTGCTCTAAGTCCACAAACAGAAGGGGTGAGCGCGAAATACTTTACAGATTGTAACGAGGGTAGGTGCTCAAGCTTAGCAGATGATGAATCGGAAGCTCGAAAGCTATGGAACAACACTCATGCCTTGCTTCACAAACGACTGAGTCAAGCGGCAAATTGA 999 0.4234 MKATLRYLAGITGPSGFGSKSTAEQVTQACSNSSLLPSNLTALITGGSSGIGAETARVLAKRGVRVVIAARDLKKAKDVIDNIQKESPNAEVILLEIDLSSFASIQRFCSEFLALELPLNILINNAGVFSPTLEFSEDKFEMTFATNYLGHFLLTKMLLEKLIDTANKTGIQGRIINVSSVIHSWVSRGGFRFNDMLTGKNYNGTRAYAQSKLANILHVKEMARQLKARNARVTINAVHPGIVKTGIIRAHKGLITDSLFFFASKLLKSISQGAATTCYVALSPQTEGVSAKYFTDCNEGRCSSLADDESEARKLWNNTHALLHKRLSQAAN* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1585 332 Gene3D - 37 328 - -
Dod05g1585 332 Pfam short chain dehydrogenase 41 182 IPR002347 -
Dod05g1585 332 PRINTS Glucose/ribitol dehydrogenase family signature 231 248 IPR002347 -
Dod05g1585 332 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Dod05g1585 332 PRINTS Glucose/ribitol dehydrogenase family signature 41 58 IPR002347 -
Dod05g1585 332 PRINTS Glucose/ribitol dehydrogenase family signature 117 128 IPR002347 -
Dod05g1585 332 PRINTS Glucose/ribitol dehydrogenase family signature 167 183 IPR002347 -
Dod05g1585 332 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 40 299 IPR036291 -
Dod05g1585 332 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 328 - -
Dod05g1585 332 CDD retinol-DH_like_SDR_c_like 41 316 - -
Dod05g1585 332 PANTHER RETINOL DEHYDROGENASE 4 328 - -
Dod05g1585 332 Coils Coil 66 86 - -
Dod05g1585 332 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 227 IPR002347 -
Dod05g1585 332 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 117 128 IPR002347 -
Dod05g1585 332 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 173 181 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1585 Dod-Chr5 40941872 40945930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1585 43 250 Acyl Lipid Metabolism Gene Families AT3G55290 33.803 3.30e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1585 - K11153 gmx:100819058 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1585 05 40941872 40945930 Dod05g1585 05 40941872 40945930 ECH
Dod05g1585 05 40941872 40945930 Dod09g0252 09 3759399 3764149 PCT