Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1578 ATGGGTATGGAAGAAGAGAAGAGTAGTGTGTCGCTGCCGGGTGGCCCAGACGGGAAGAAGAGGAGGGTAACGTACTTCTACGAGCCAACAATAGGTGACTACTACTATGGCCAGGGGCACCCAATGAAGCCACACAGAATCCGCATGGCCCACAACCTCATCGTCCACTACTCCCTCCACCGCCGCATGGAGATCAACCGCCCCTTCCCCGCTGCCCCCGACGACATCCGCCGCTTCCACTCCGACGACTACGTCGACTTCCTCGCCTCCGTCTCCCCCGACACCTTGGCCGAGCCGTCCTTCGCCCGCCACCTCAAGCGCTTCAACGTCGGCGAGGACTGCCCCGTGTTTGACGGGCTTTTCAACTTCTGCCAGGCCTCCGCTGGCGGCTCCATCGGCGCCGCCGTCAAGCTCAACCGCCAGGACGCCGACATCGCCATCAATTGGGCCGGAGGCCTCCACCATGCTAAGAAGGCCGAGGCGTCGGGGTTCTGTTACGTCAACGACATTGTCCTCGGCATCCTCGAACTCCTCAAAGTTCACAGGCGTGTGCTGTATGTTGACATTGATGTTCACCATGGGGATGGTGTTGAGGAGGCCTTTTATACAACTGATAGAGTAATGACTGTGTCTTTTCATAAGTTTGGGGACTTTTTCCCTGGCACTGGACACATTAAGGACATGGGGGTGGGTCCAGGAAAGAATTATGCTGTCAATGTCCCATTAAATGATGGAATGGACGATGAGAGTTTCCGGGCTCTGTTTCGACCCATCATTCAAAAAGTCATGGAAGTTTTTCAACCTGATGCTGTTGTTCTTCAATGTGGAGCTGATTCATTGTCTGGCGACAGGTTGGGTTGCTTCAACTTGTCTGCGAAGGGTCATGCAGATTGCCTTCGTTTCCTTAGATCTTTCAATGTTCCTCTCATGGTCTTGGGTGGAGGTGGATATACCATTCGGAACGTCGCTCGTTGTTGGTGTTATGAGACAGCAGTGGCAGTCGGAGTGGAGCCTGATAATAAGTTGCCTTATAATGAATATTATGAGTATTTTGGCCCAGATTATACTCTTCATGTGGATCCGAGCAACATGGAGAACCTAAACACAGCCAAGGATATGGAAAAAATAAGGACCACTCTAATAGAGCAGATTTCCAAACTTCCCCATGCTCCCAGTGTACCTTTTCAAACAACACCATCAACCATGGAAGTTCCAGAAGAGGCGGAAGAAGAAATGGATAGAAGACCAAAGCGTCGCATATGGAGTGGTGATGACTATGATTCTGATCATGATGAAGATGATAAGGCTATTATAAAGTCCTCAATCTTAACTGACCATATGAGGGATGTTGCAGATGAAATGGAAGAAGACAAGCCAAAAGTGCCTCCACCATCTGGATGCTGCTAG 1407 0.5082 MGMEEEKSSVSLPGGPDGKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRRMEINRPFPAAPDDIRRFHSDDYVDFLASVSPDTLAEPSFARHLKRFNVGEDCPVFDGLFNFCQASAGGSIGAAVKLNRQDADIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDMGVGPGKNYAVNVPLNDGMDDESFRALFRPIIQKVMEVFQPDAVVLQCGADSLSGDRLGCFNLSAKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVDPSNMENLNTAKDMEKIRTTLIEQISKLPHAPSVPFQTTPSTMEVPEEAEEEMDRRPKRRIWSGDDYDSDHDEDDKAIIKSSILTDHMRDVADEMEEDKPKVPPPSGCC* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1578 468 PANTHER HISTONE DEACETYLASE 6 446 - -
Dod05g1578 468 MobiDBLite consensus disorder prediction 390 433 - -
Dod05g1578 468 PRINTS Histone deacetylase signature 42 59 IPR003084 GO:0004407|GO:0016575
Dod05g1578 468 PRINTS Histone deacetylase signature 129 149 IPR003084 GO:0004407|GO:0016575
Dod05g1578 468 PRINTS Histone deacetylase signature 229 242 IPR003084 GO:0004407|GO:0016575
Dod05g1578 468 PRINTS Histone deacetylase signature 75 93 IPR003084 GO:0004407|GO:0016575
Dod05g1578 468 PRINTS Histone deacetylase signature 170 186 IPR003084 GO:0004407|GO:0016575
Dod05g1578 468 PRINTS Histone deacetylase signature 108 125 IPR003084 GO:0004407|GO:0016575
Dod05g1578 468 PRINTS Histone deacetylase signature 246 264 IPR003084 GO:0004407|GO:0016575
Dod05g1578 468 MobiDBLite consensus disorder prediction 448 468 - -
Dod05g1578 468 PIRSF HDAC_I_euk 4 462 IPR003084 GO:0004407|GO:0016575
Dod05g1578 468 MobiDBLite consensus disorder prediction 408 433 - -
Dod05g1578 468 CDD HDAC_classI 26 333 - -
Dod05g1578 468 SUPERFAMILY Arginase/deacetylase 21 386 IPR023696 -
Dod05g1578 468 PRINTS Histone deacetylase superfamily signature 268 278 IPR000286 -
Dod05g1578 468 PRINTS Histone deacetylase superfamily signature 151 174 IPR000286 -
Dod05g1578 468 PRINTS Histone deacetylase superfamily signature 183 198 IPR000286 -
Dod05g1578 468 PANTHER HISTONE DEACETYLASE 6 446 - -
Dod05g1578 468 Pfam Histone deacetylase domain 40 331 IPR023801 -
Dod05g1578 468 Gene3D Histone deacetylase domain 19 394 IPR037138 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1578 Dod-Chr5 40801945 40807132 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1578 K06067 - gmx:100807923 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1578 05 40801945 40807132 Dod05g1578 05 40801945 40807132 ECH
Dod05g1578 05 40801945 40807132 Dod09g0241 09 3609864 3615354 PCT