Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1575 ATGATGGGTAACCCAAACCAAAACCCAAACCATGAAGAGGAGAAGAGTCTGCAGGAGGAGCTGTCGGGTCCCATCATGCTTGGCGACCGAATCATAAAACTGGCGCAGGAGATCGAGTCTTCCAAGGTGGACTGCTCCGAGCTGGCAAAGAAGGTCCAGCTCCTCTGCGACAACCTCCGCTCCGCCGTGCGCGCCGCCTCCTCCGCCACCCAGCCCCTCAACGAGCGCCCCATCCGCCGCATCGTCGCCGAGGTCTCCAAGAACCTTGACCGCACCCTCGCCCTCGTCCGCCGCTGCAAGCGCCACGGCGGCGTCCTCCGCCAGGTCTTCTCCATCACCACCACCGCCGACTTCCGCAAGGTCCGGAACCTTCTCGAATCTTCCAACGGCGACATGCTCTGGCTCCTCAGCATCTTCGACTCCAAAGGCACCAACCTCTCCCTCCCTCCTATCGCCAGCAACGACCCTATCCTCGCTTGGGTCTGGACCTACACCTATACCCTTCAGTTGGGAACCCTTAAGGACCGTGCTGAAGCTGCTACGGAACTTGGTTCCCTTGCTACGGACAACGACCGTAACAAGGTCATTATCTTGGATGAAGGTGGGGTGTTGCCGCTGCTGAAGCTTCTCAAGGAGAGCGCTTCCCCTGATGCTCAGGTTGCTGCTGCTAATGCTCTTGTTAGTGTTGCAACGAACCAGGAGAGGGTTGTTAGGTTCATTGTTGAGTCCCTTGGGATCCCCACCATTGTGCAGGTTCTTGGTGATTCCCCCATGAGGGTTCGTGTTTCGGTTGCTAATTTGGTTGCCACCATGGCTGAGCAGCACTCTGTTGCTCAGGAGGAGTTTGTGAGGGCTAATGTGACTAGGCCTCTCGTGTCGTTGTTGTCGATGGATACGGTTCTTGCTGACCCTATGGCAGGTCGTGCCAGCATTCATTCGCTGGTTCTGAATTTGTCGTCGGTGGGAGAGTCTTCCTCGGTGCCGGGGAATTCTTCAGATGGGAGTAGCAGAGGGGGGCAGTATAGGAGGGAGAGGGAGAAGGAGGTTGAGGGCCAGGAGTTGAGGAATGAGATCAAGGTTAGTTGTGCTAAGGCTCTGTGGAAACTCTCCAAAGGGTGTCTTTTGACTAGCAGGAAGATCGCGGAGACTAAAGGCTTGCTTTGTCTGGCTAAGATTATTGAGTCTGAGAGTGGAGAGTTGCAGTTCAATTGTCTCATGGCTGTCAAGGAGATTACTGAGGTTGCTGAGTCCAATGCTGATCTTAGGAGAGTTGCTTTCAAGCCTACTGCTCCGGCTGCGAAAGCAGTCTTGGATCAGCTTTTGAGAGTGGTTCAGGAAGAGAGCAATCCATCATTGCAGATTCCTGCTATTCAGTCGATCGGATCCTTGGCCAGAAACTTCCCTGGGAAGGTTCCTCATGTTCTTGGTCCTTTGGTCGCGCCACTTGGTAACAAAGTTGTGGAGATAGCAATTGAGGCTGCTGCTGCCTTGGGAAAATTTGTGTGCTCAGACAACTACAACTGTGTTGACCATTCCAAGGCAATACTTGAGCTTGATGGAGTTCCTAAACTAATGAATCTGCTGCAGATAAATCATGACCATGCACAGCTGCATGGGCTGAAATTACTTTGTTACCTTGCCTTGAATGTGGGCAATAGTAAGGTTCTTGAGCAAGAACGTGCCTTGAGTACTCTAGAGAAGCTCTTTCGTCCTGTTATAGCTCAGCATCCCGATTTGAAGGAGCTGGTAACAAAAGCCATACACCACCTCACCCTTTATCAGCCAGGAGCTCAATTGCACAGACAGCCCCAAGGGGGTGCCCTTCTAGAGATTTAA 1836 0.53 MMGNPNQNPNHEEEKSLQEELSGPIMLGDRIIKLAQEIESSKVDCSELAKKVQLLCDNLRSAVRAASSATQPLNERPIRRIVAEVSKNLDRTLALVRRCKRHGGVLRQVFSITTTADFRKVRNLLESSNGDMLWLLSIFDSKGTNLSLPPIASNDPILAWVWTYTYTLQLGTLKDRAEAATELGSLATDNDRNKVIILDEGGVLPLLKLLKESASPDAQVAAANALVSVATNQERVVRFIVESLGIPTIVQVLGDSPMRVRVSVANLVATMAEQHSVAQEEFVRANVTRPLVSLLSMDTVLADPMAGRASIHSLVLNLSSVGESSSVPGNSSDGSSRGGQYRREREKEVEGQELRNEIKVSCAKALWKLSKGCLLTSRKIAETKGLLCLAKIIESESGELQFNCLMAVKEITEVAESNADLRRVAFKPTAPAAKAVLDQLLRVVQEESNPSLQIPAIQSIGSLARNFPGKVPHVLGPLVAPLGNKVVEIAIEAAAALGKFVCSDNYNCVDHSKAILELDGVPKLMNLLQINHDHAQLHGLKLLCYLALNVGNSKVLEQERALSTLEKLFRPVIAQHPDLKELVTKAIHHLTLYQPGAQLHRQPQGGALLEI* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1575 611 SMART arm_5 189 231 IPR000225 GO:0005515
Dod05g1575 611 SMART arm_5 549 592 IPR000225 GO:0005515
Dod05g1575 611 SMART arm_5 232 273 IPR000225 GO:0005515
Dod05g1575 611 SMART arm_5 508 548 IPR000225 GO:0005515
Dod05g1575 611 Gene3D - 347 602 IPR011989 -
Dod05g1575 611 PANTHER ARMADILLO REPEAT ONLY 4 12 603 - -
Dod05g1575 611 MobiDBLite consensus disorder prediction 1 20 - -
Dod05g1575 611 PANTHER ARMADILLO REPEAT ONLY 1 PROTEIN 12 603 - -
Dod05g1575 611 Gene3D - 18 138 IPR036537 GO:0007166
Dod05g1575 611 Pfam Armadillo/beta-catenin-like repeat 190 226 IPR000225 GO:0005515
Dod05g1575 611 MobiDBLite consensus disorder prediction 322 350 - -
Dod05g1575 611 SUPERFAMILY ARM repeat 174 593 IPR016024 -
Dod05g1575 611 Gene3D - 169 326 IPR011989 -
Dod05g1575 611 MobiDBLite consensus disorder prediction 322 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1575 Dod-Chr5 40725188 40728821 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1575 - - gmx:100813824 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1575 05 40725188 40728821 Dod05g1575 05 40725188 40728821 ECH
Dod05g1575 05 40725188 40728821 Dod09g0239 09 3546389 3551794 PCT