Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1384 ATGCTAATTTCAGGAAGAATGGCAAAGAGTTACTTCAAACAAGAGCATGATCTTGAGAAGAGAAGAGCTGAGGCTGCTAGGATTAGGGAGAAATACCCCGACCGTATCCCGGTGATTGTGGAGAAGGCAGAAAGAAGTGATATCCCAAGTATTGACAAGAAGAAGTACCTTGTACCTGCTGATCTGACAGTTGGACAGTTTGTCTATGTTATCCGAAAAAGGATCAAATTAAGTGCAGAAAAGGCAATCTTTATATTTGTGGACAATGTCCTTCCGCCTACAGGAGCAATTATGTCTGCCATATATGATGAGAAAAAGGATGAAGATGGGTTTCTTTACGTTACCTACAGTGGGGAGAACACCTTTGGGTATCTAACTTCCCACTAG 387 0.4186 MLISGRMAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFGYLTSH* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1384 128 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 7 124 IPR004241 -
Dod05g1384 128 Gene3D - 3 124 - -
Dod05g1384 128 Pfam Autophagy protein Atg8 ubiquitin like 20 123 IPR004241 -
Dod05g1384 128 CDD Ubl_ATG8 18 120 - -
Dod05g1384 128 SUPERFAMILY Ubiquitin-like 9 123 IPR029071 -
Dod05g1384 128 PANTHER AUTOPHAGY-RELATED PROTEIN 7 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1384 Dod-Chr5 37948376 37951903 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1384 K08341 - gmx:100499835 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1384 05 37948376 37951903 Dod05g1384 05 37948376 37951903 ECH
Dod02g0984 02 12443309 12447038 Dod05g1384 05 37948376 37951903 PCT