Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1304 ATGACTTTCTTTTATCCATTGCAAAATGTTAAAAATCTGGTATTAGAACTAGAGATGGAAAGAAAATACATTGTTGAATTCCAGTGGGAAATTAGTTCAAAATCATGTATACAAGCTAGAGAAACAAAAGATAAAAAGAAAGAACACTCTAGGGGCAATTCGAGGAACCCTAAAACCCTCCAAAAGTCCAGCCTGCAATTTTCCCTTCCTCTCTTATTCCTCACACCCTCATACATTGAATTCTTAGTACACAATGTGATAATGATGTTCTCTTTGCAGGAAGAATTTCAATTTGCAATCTTCAAGAATAGGAAAAAGGAGAATATCTTTGCAAATCGGATCTTTGAGCTATTTGATGTTAAAAGGAAGGGAGTGCTTGACTTTGATGACTTTGTTCGATCTCTCAATGTCTTCCACCCAAATGCGCCACTAGAAGACAAGATTGATTTTTCATTTAGGCTCTATGATTTGCACAATACAGGCTTCATAGAACGCCAAGAGGTCAAGCAAATGTTAATTGCACTTCTTTGTGAGTCTGAAATGAAGTTAGCAGATGAGGTGATAGAAACAATTCTTGATAAGACGTTCTTGGATGCTGACCTGAATCAAGATGGGAAAATCGACATTGTTGAGTGGCAAAATTTTGTTTCTAAAAATCCATCACTGCTTAAAATCATGACCCTACCTTACCTGAGGGACATAACAACTTCTTTCCCAAGTTTTGTATTTAACTCTAACGTGGATGAGATTGCTGCTTGA 759 0.365 MTFFYPLQNVKNLVLELEMERKYIVEFQWEISSKSCIQARETKDKKKEHSRGNSRNPKTLQKSSLQFSLPLLFLTPSYIEFLVHNVIMMFSLQEEFQFAIFKNRKKENIFANRIFELFDVKRKGVLDFDDFVRSLNVFHPNAPLEDKIDFSFRLYDLHNTGFIERQEVKQMLIALLCESEMKLADEVIETILDKTFLDADLNQDGKIDIVEWQNFVSKNPSLLKIMTLPYLRDITTSFPSFVFNSNVDEIAA* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1304 252 ProSiteProfiles EF-hand calcium-binding domain profile. 143 178 IPR002048 GO:0005509
Dod05g1304 252 SMART efh_1 191 219 IPR002048 GO:0005509
Dod05g1304 252 SMART efh_1 110 138 IPR002048 GO:0005509
Dod05g1304 252 SMART efh_1 147 175 IPR002048 GO:0005509
Dod05g1304 252 CDD EFh 147 217 IPR002048 GO:0005509
Dod05g1304 252 Pfam EF-hand domain pair 146 215 IPR002048 GO:0005509
Dod05g1304 252 PANTHER CALCINEURIN B 93 251 IPR045198 GO:0005509|GO:0019722|GO:0019900
Dod05g1304 252 ProSitePatterns EF-hand calcium-binding domain. 200 212 IPR018247 -
Dod05g1304 252 Gene3D - 43 250 - -
Dod05g1304 252 ProSiteProfiles EF-hand calcium-binding domain profile. 187 222 IPR002048 GO:0005509
Dod05g1304 252 ProSiteProfiles EF-hand calcium-binding domain profile. 106 141 IPR002048 GO:0005509
Dod05g1304 252 SUPERFAMILY EF-hand 94 241 IPR011992 -
Dod05g1304 252 PANTHER BNAC07G34450D PROTEIN 93 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1304 Dod-Chr5 36626898 36631392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1304 93 252 EF-hand Containing Proteins AT4G17615 82.500 1.99e-95 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1304 K06268 - cit:102622664 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1304 05 36626898 36631392 Dod05g1304 05 36626898 36631392 ECH
Dod02g0916 02 11773589 11779310 Dod05g1304 05 36626898 36631392 PCT