Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0916 ATGGGGTGTTTCCACTCTAAAGCAAGAAGACACGGTTTTGGAATATTAAAAAAGAAAAGACGACAAGTTGTTGGGGAGGAAGACCCAGTTGCTCTTGCATCACAGACAGCTTTCAGTGTTAGTGAGGTTGAAGCACTCTATGAACTTTTTAAGCGCATCAGCGGCTCTGTCATTGATGATGGACTAATAAGCAAGGAAGAATTTCAATTGGCAATTTTCAATTGTAAGGAAAAGGAGAATCTCTTTGCAAGTCGGATCTTCGATCTATTTGATGTCAAAAGGAAGGGAGTGATTGACTTTGGTGACTTCGTTAGAGCACTCAATGTTTTCCACCCAAATGCACCTCAACAAGTCAAGATTGACTTTTCATTTAGGCTTTATGATTTGGACAACACAGGCTTTATAGAGCGCCATGAGGTCAAGCAAATGATAATTGCACTTCTCTGTGAATCTGAAATGAAGTTGACAGATGAGATGATAGAAGCAATCCTTAACAAGACATTCTTGGCTGCTGACCCGAACCAGGATGGGAAAATAGACAAGTCCGAATGGCAGGACTTTGTTTCTGAAAATCCATCACTGCTAAGAATCATGACACTCCCCTACCTAAGTGACGTAACGACAGCTTTCCCAAGTTTTGTATTTAACTCCAAGGTTGATGACGATATTGATTCTTGA 678 0.4056 MGCFHSKARRHGFGILKKKRRQVVGEEDPVALASQTAFSVSEVEALYELFKRISGSVIDDGLISKEEFQLAIFNCKEKENLFASRIFDLFDVKRKGVIDFGDFVRALNVFHPNAPQQVKIDFSFRLYDLDNTGFIERHEVKQMIIALLCESEMKLTDEMIEAILNKTFLAADPNQDGKIDKSEWQDFVSENPSLLRIMTLPYLSDVTTAFPSFVFNSKVDDDIDS* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0916 225 ProSiteProfiles EF-hand calcium-binding domain profile. 115 150 IPR002048 GO:0005509
Dod02g0916 225 PANTHER CALCINEURIN B 14 223 IPR045198 GO:0005509|GO:0019722|GO:0019900
Dod02g0916 225 ProSitePatterns EF-hand calcium-binding domain. 128 140 IPR018247 -
Dod02g0916 225 SUPERFAMILY EF-hand 32 213 IPR011992 -
Dod02g0916 225 SMART efh_1 119 147 IPR002048 GO:0005509
Dod02g0916 225 SMART efh_1 82 110 IPR002048 GO:0005509
Dod02g0916 225 SMART efh_1 163 191 IPR002048 GO:0005509
Dod02g0916 225 ProSitePatterns EF-hand calcium-binding domain. 172 184 IPR018247 -
Dod02g0916 225 PANTHER CALCINEURIN B-LIKE PROTEIN 14 223 - -
Dod02g0916 225 PRINTS Recoverin family signature 133 151 - -
Dod02g0916 225 PRINTS Recoverin family signature 86 107 - -
Dod02g0916 225 PRINTS Recoverin family signature 179 199 - -
Dod02g0916 225 Pfam EF-hand domain pair 119 188 IPR002048 GO:0005509
Dod02g0916 225 CDD EFh 119 189 IPR002048 GO:0005509
Dod02g0916 225 Gene3D - 28 222 - -
Dod02g0916 225 ProSiteProfiles EF-hand calcium-binding domain profile. 78 113 IPR002048 GO:0005509
Dod02g0916 225 ProSiteProfiles EF-hand calcium-binding domain profile. 159 194 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0916 Dod-Chr2 11773589 11779310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0916 1 221 EF-hand Containing Proteins AT4G17615 71.946 9.49e-115 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0916 K06268 - vvi:100243294 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0916 02 11773589 11779310 Dod02g0916 02 11773589 11779310 ECH
Dod02g0916 02 11773589 11779310 Dod05g1304 05 36626898 36631392 PCT