Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1211 ATGGCCACATTTTATTACCCTCTCAGAAACGCTGATGTCTTTTTTCTATTACTATTATTATGGGCTCTTGTATCAGCTATGTGTGTTTGGGGACGACCAGCCACTTTTCTGCAAGACTTTCAAGTCACGTGGGCTGAGTCCCATATCAGGCAAATTGATCAAGGAAGAACAATCCAACTCATTCTAGACCGAAACTCTGGATGCGGGTTTGCTTCCAAGGTGAAGTACATGTTTGGTCGTATTAGCATGAAGATCAAACTCATACCCGGAGACTCTGCTGGGACAGTCACAGCATTTTACATGAACTCGGACACAAATTCTGTTCGTGATGAGCTCGATTTTGAGTTCTTGGGGAACCGTAGTGGACAACCTTACACGGTTCAAACAAACATCTATGCTCACGGGAAGGGGGATAGAGAACAAAGGGTCAACCTCTGGTTTGATCCTTCTGCGGACTACCACACCTACACAATTCTATGGAATCATCGCCATATTGTCTTCTACATTGACAATTTTCCCATCAGAGTATACAAGAACAACGAGGCGAAGGGAATCCCATACCCGAAGATGCAGCCCATGGGAGTGTATTCCACATTGTGGGAAGCAGATAACTGGGCAACCAGGGGAGGCTTGGAGAAAATTGATTGGAGCAGAGCACCTTTCAACGCTTATTACAAGGACATTGACATTGAAGGGTGCGCGGTGCCTGGGGGTGCTAGCTGTGCCTCGAACCCAAGTAACTGGTGGGAAGGGGCTGCATACCAAGGTCTTAATGCCATTGAATCAAGGTTGTACAGGTGGGTTCGTGTGAACCACCTGATCTATGATTATTGTCAAGATAAGCCAAGGTACCCAGTGACCCCACCCGAGTGCCTTGCCGGCATGTAG 888 0.4707 MATFYYPLRNADVFFLLLLLWALVSAMCVWGRPATFLQDFQVTWAESHIRQIDQGRTIQLILDRNSGCGFASKVKYMFGRISMKIKLIPGDSAGTVTAFYMNSDTNSVRDELDFEFLGNRSGQPYTVQTNIYAHGKGDREQRVNLWFDPSADYHTYTILWNHRHIVFYIDNFPIRVYKNNEAKGIPYPKMQPMGVYSTLWEADNWATRGGLEKIDWSRAPFNAYYKDIDIEGCAVPGGASCASNPSNWWEGAAYQGLNAIESRLYRWVRVNHLIYDYCQDKPRYPVTPPECLAGM* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1211 295 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 244 291 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Dod05g1211 295 Pfam Glycosyl hydrolases family 16 38 218 IPR000757 GO:0004553|GO:0005975
Dod05g1211 295 ProSitePatterns Glycosyl hydrolases family 16 active sites. 111 121 IPR008263 GO:0004553|GO:0005975
Dod05g1211 295 Gene3D - 24 293 - -
Dod05g1211 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 13 293 IPR044791 GO:0004553
Dod05g1211 295 PIRSF EndGlu_transf 4 295 IPR016455 GO:0010411|GO:0016762|GO:0042546
Dod05g1211 295 CDD GH16_XET 34 291 IPR016455 GO:0010411|GO:0016762|GO:0042546
Dod05g1211 295 SUPERFAMILY Concanavalin A-like lectins/glucanases 38 293 IPR013320 -
Dod05g1211 295 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 1 225 IPR000757 GO:0004553|GO:0005975
Dod05g1211 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 6-RELATED 13 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1211 Dod-Chr5 34479787 34481910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1211 13 293 Glycoside Hydrolase AT5G65730 75.801 1.38e-167 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1211 K08235 - gmx:100784660 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0836 02 10782404 10784884 Dod05g1211 05 34479787 34481910 PCT