Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0767 ATGGCACCCTCTATTCTTCTGGTTCTGTTGTCCCTTCTGTTGGTTGGTTATGTCCAACCCCATGAAGAGGGTTTCATCTATGCAGTGATATCAGATAAGGGTCTTGATTTTGCCAAGGACATGCTGATAGAGCAAGGTATTGCTTCTATTGATCAGCTTCAGCTGCCAGAGATTGAGAAATCTGTCAAAGTCTCACTTGTTGGAAATGCCAAAGTAGTGCTTTCTGAGATCACAATCAAGGATGTTCAGATAAAGTCTTCATCTGTTGAGACTGGAGAGACTGGCATAGTTCTAGTTGCCTCAGATGCCACTGCCAATTTGATTATGAAGTGGAGATATTCTTGCAGCAGTTGGTTACTCCCATTTGGGCTTTCGGATAGTGGGAATGCAACTGTGAAGGTTAAAGGTATGCAAGTGGGGCTTACAGTAAATTTAAGGAACCAAGAAGGAACTCTTAAGTTGGTTCTCTTAGATTATGGATGTTATGTGGGAGATTTATCTATAAAGTTGGAAGGTGGAGCATCTTGGCTTTACCAAGTGTTAGTGAATGCTTTTGCAGGGAATATAGCATCTGCAGTTGAAGAGGGCATTTCAGATAAAATAAGAGAAGGGATAGGGAAGCTTGACATGTTAATGCAATCTCTTCCAAAGCAAATCTATCTGGACAAAACTGCTGCACTAAATGTTTCTTTTGTTGACAATCCTGTGTTGAGTAATACTTCTGTTGCTATAGCAATTAATGGTTTATTCACAGGGAGAAATGATGTTTCAGTACCTCAAGGTTACCAGAAAGGATTACAGGTTTCTTCTGCCTGTGGTGGTTTACCAAAGATGATAAAGGTTTCAGTACATGAAAATGTGTTCAAATCTGCTTCCCTAGTTTACTTCAACGCAGGTAGTATGCAATTGATTGTTGACGAACTACCAGATCAGGACATTTTGAACACTGCTGAATGGAGATTCATAGTTCCTCAATTGTACAAGAAATATCCAAATGATGACATGCAGCTTAATATCTCTGTATCTTCTCCACCAGTGATACTAGTGAACTCCCAAGATATTGATGCATCCATTTCTGTAGATATAACAATTGATGTTCTGGAAGCTGGTGAAGTCATACCTGTTGCATGCATCTCAGTGGATATTAGTGCTTCATGTGGTGTGGAGATTATAGGAAACAAAATCACTGGTAGGCTCGGATTGCAGAAGTTTTCTACATACTTGAAATGGAGCAAGATAGGAAAATTGCGCCTACATCTGATTCAGTCATTGATGTCAACTGTCCTCAAAACAGTCGTCCTACCATACCTGAACTTGGAATTAAAAAGAGGATTAGCATTGCCAGTTATTGACGGTTTTTCCTTTCAGAATGCTAATATCTTATATTTTCATCCATGGATTGCAGTATGTAGTGATGTCTCCTTCTTAAGAGACTACCATCTCAGTCAGCAGTCAGCTTATGTATCATAA 1470 0.3952 MAPSILLVLLSLLLVGYVQPHEEGFIYAVISDKGLDFAKDMLIEQGIASIDQLQLPEIEKSVKVSLVGNAKVVLSEITIKDVQIKSSSVETGETGIVLVASDATANLIMKWRYSCSSWLLPFGLSDSGNATVKVKGMQVGLTVNLRNQEGTLKLVLLDYGCYVGDLSIKLEGGASWLYQVLVNAFAGNIASAVEEGISDKIREGIGKLDMLMQSLPKQIYLDKTAALNVSFVDNPVLSNTSVAIAINGLFTGRNDVSVPQGYQKGLQVSSACGGLPKMIKVSVHENVFKSASLVYFNAGSMQLIVDELPDQDILNTAEWRFIVPQLYKKYPNDDMQLNISVSSPPVILVNSQDIDASISVDITIDVLEAGEVIPVACISVDISASCGVEIIGNKITGRLGLQKFSTYLKWSKIGKLRLHLIQSLMSTVLKTVVLPYLNLELKRGLALPVIDGFSFQNANILYFHPWIAVCSDVSFLRDYHLSQQSAYVS* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0767 489 Pfam LBP / BPI / CETP family, C-terminal domain 277 473 IPR001124 GO:0008289
Dod05g0767 489 PIRSF Lipid_binding_protein 3 480 IPR030675 GO:0005615|GO:0008289
Dod05g0767 489 Gene3D - 33 213 - -
Dod05g0767 489 SMART bpi2_2 273 471 IPR001124 GO:0008289
Dod05g0767 489 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 27 239 IPR017943 GO:0008289
Dod05g0767 489 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 244 475 IPR017943 GO:0008289
Dod05g0767 489 SMART bpi1_3 30 255 IPR017942 GO:0008289
Dod05g0767 489 PANTHER OS06G0309200 PROTEIN 1 489 IPR045897 -
Dod05g0767 489 PANTHER LBP/BPI/CETP FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN 1 489 - -
Dod05g0767 489 Gene3D - 28 460 - -
Dod05g0767 489 Pfam LBP / BPI / CETP family, N-terminal domain 34 207 IPR017942 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0767 Dod-Chr5 12022962 12028319 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0767 K05399 - gmx:100815362 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0767 05 12022962 12028319 Dod05g0767 05 12022962 12028319 ECH
Dod05g0767 05 12022962 12028319 Dod08g0236 08 2639637 2643660 PCT