LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod05g0164	ATGGGGAAAACAAGAAGGACTTTATCTTCATATCAGTCTCTCTCTGCTCTTCTGTTGCTTTGTTTCTATGGCACACTTGTCTGTGCTAACTACATAAAGTACAACACTGGTGCTGGTGTTGTGGAACGGAAATTGAATGTTCACCTGGTTGCACATTCCCACGATGATGTTGGTTGGTTGAAGACCATTGATCAGTACTATGTTGGATCAAACAATTCTATTCAGGGGGCATGTGTCGAGAATGTGCTGGACTCTGTGGTTGTGTCCCTTCAGAAGGATCCAAATAGAAAGTTTGTGTTTGCTGAGATGGCGTTTTTCCATAGATGGTGGGTAGAACAAAGTCCAGAGACACAAGAACAAGTCAGAAAGCTTGTGGATGCAGGGCAGCTAGAATTCGTGAATGGGGGTTGGTGCATGCACGATGAAGCGGCAGCACATTACATAGACATGATAGACCAAACCACGTTGGGGCATCGATTCATAAAGGCCCAGTTCAACAAGACACCTCGTGCTGGATGGCAAATTGACCCATTTGGACACTCTGCTGTTCAAGCTTATCTTCTAGCTGCTGAGGTTGGCTTTGATTCTATACACTTCGCCAGGATTGATTATCAAGACAGAGCTAAGCGCAAAGTTGATAAGTCTCTAGAAGTTGTTTGGCGTGGATCCAAAACATTTGGTTCTTCAGCTCAGATTTTTGCCAATGCTTTCCCGGTTCATTATAGTGCTCCAGGCGGCTTTGATTTTGAAGTCAATAACGATGATCCAAAAGTGGTCCCAGTGCAGGATGATCCTCTTATTTTTGACTACAATGTTCAACAACGAGTCCAAGCCTTTATTGATGCCGCTATTACTCAAGCAAATGTGACAAGGACAAACCATATCATGTGGACAATGGGTGATGATTTCAAATACCAATATGCAGAATCTTGGTTCAAGCAAATGGATAAACTAATTCACTATGTTAATTTGGATGGTAGAGTGAATGCCTTGTATTCTACTCCATCTATTTACACCGATGCCAAACATGCTGCAAATCAATCATGGCCACTGAAAATTGATGATTACTTCCCGTATGCTGATGGAGCAAATGCTTATTGGACAGGCTACTTCACCAGTCGCCCAGGCCTTAAGCGATATGTTAGGTTGCTAAGTGCATACTACTTGGCAGCGCGCCAACTTGAATTTTTGGCTGGAAAGAGGTCAACAATAGACAGTAATACATTTGACCTTGGAGATGCTCTTGGAATCGCGCAGCACCATGATGCTATCTCTGGAACTGCCAAACAACATACAACTGATGACTATGCCAAACGACTAGCTATTGGGGCCTCTAAGGCTGAAGCAGTTATTAGTTCATCTTTGGCTTGTCTTACTGGTAAGCAATCAGGTGATCAGTGTTCAGCATCTGCAACGGCATTGGCCCAGTGTCAATTACTCAATATCAGTTACTGTCCACCAACAGAGGATCATATTCCAGAAGCTAAAAGTTTGGTAGTAGTTGTGTATAATCCACTCGGATGGAATCGTACTGACATTATTAAAATACCAGTTAATGATGATAATCTTGTTGTCAAAGATTCTCATGGCAATAGCATTGAAGCACAGTATGTGGATACAGATGATGTCACTGCAAATTTAAGAAATTTCTATGTCAGGGCCTATTTGGGAGTGATACCAAATCAAGCCCCAAAATATTGGCTTCTGTTTCAAGTGTCAGTACCTCCACTTGGATGGAGTACTTACTTCATTTCTAAAGCAGGTGCAAATGGGAAAAGTAGAAATCAATTTATCTCAAATCTCAAAAGCAAGGAAGGCGATACGATTAACATAGGCCCGGGGAATTTAAAGATGTCCTTTTCTCCAACCTCTGGACAAATCAAACGGATGTATAATTCCAGAACTGGAGTTGATATACCAATTCAGCAAAGCTATCTCTGGTATGGTTCTAACAATGGCGATGATGGTCAGGCTTCTGGTGCATATATATTCCGGCCTAATGGATCTCCCCCAACTATTGTTTCAAGATCAGTTCCCTACAAGGTAATCCGTGGACCGCTAGTTGATGAGATTCATCAGATATTTAGCTCCTGGATTTACCAGGTTACTAGGCTCTACAAAGACAAAGACCATGCTGAAATTGAATTCACTATTGGTCCAATTCCAACTGATGATGGAGTTGGGAAAGAGGTGATCACACAAATCACAGCAAATATGGCTACAAACAAGGAGTTTTATACTGATTCTGATGGAAGAGATTTCCTGAAACGGATTCGCGATCATAGGGATGATTGGCCCCTTCAAGTTACTCAACCTGTTGCTGGAAACTATTATCCGCTTAACCTTGGAATTTATATTGAGGATCAGAAATCTGAACTCTCGGTCTTAATTGATCGTGCCACTGGTGGAGCCAGCATCAAAGATGGTGAGGTGGAACTGATGCTTCATAGGCGTATTCTCCATGATGATGGTAGAGGAGTAGGCGAAGCACTTGATGAACAAGTTTGCCTTAACAATTTTACATGTGAAGGACTGACAGTCAGAGGAAATTACTATATTGGCATCCACAAGCTTGGAGCTGGTTCCCGATGGCGCCGTACAACTGGTCAGGAAGTTTACTCACCACTCTTATTGGCCTTCACACATGAGAGCTTCGAAAATTGGAAGTCCTCTCATCTGACTGAAGGAACTGTCTTGGACACAAGTTACAGCTTGCCTCCCAATGTCGCTCTGATAACTCTTCAGGAGTTGGATGGTGGAGCTGTGCTTTTCCGTTTGGCACATCTATATGAGCCAAATGAAGATGTTGAGTATTCAACTCTGGCCAAAGTTGAATTGAAGAAATTGTTCGCCAAAAAACAGATAAAAGAGTTGAAGGAGGTAAATTTATCAGCCAACCAAGAGAAGTCAGAAATAAAGAAGATGAGCTGGAAGGTTGAAGGAGACAAAAAGCAAGAACCTCAACCACTTAGAGGTGGCCCTGTCAACACTGCCGATTATGTTGTTGAGCTTGGTCCCATGGAAATACGTACATTCCTGCTACAATTTTAG	3051	0.4238	MGKTRRTLSSYQSLSALLLLCFYGTLVCANYIKYNTGAGVVERKLNVHLVAHSHDDVGWLKTIDQYYVGSNNSIQGACVENVLDSVVVSLQKDPNRKFVFAEMAFFHRWWVEQSPETQEQVRKLVDAGQLEFVNGGWCMHDEAAAHYIDMIDQTTLGHRFIKAQFNKTPRAGWQIDPFGHSAVQAYLLAAEVGFDSIHFARIDYQDRAKRKVDKSLEVVWRGSKTFGSSAQIFANAFPVHYSAPGGFDFEVNNDDPKVVPVQDDPLIFDYNVQQRVQAFIDAAITQANVTRTNHIMWTMGDDFKYQYAESWFKQMDKLIHYVNLDGRVNALYSTPSIYTDAKHAANQSWPLKIDDYFPYADGANAYWTGYFTSRPGLKRYVRLLSAYYLAARQLEFLAGKRSTIDSNTFDLGDALGIAQHHDAISGTAKQHTTDDYAKRLAIGASKAEAVISSSLACLTGKQSGDQCSASATALAQCQLLNISYCPPTEDHIPEAKSLVVVVYNPLGWNRTDIIKIPVNDDNLVVKDSHGNSIEAQYVDTDDVTANLRNFYVRAYLGVIPNQAPKYWLLFQVSVPPLGWSTYFISKAGANGKSRNQFISNLKSKEGDTINIGPGNLKMSFSPTSGQIKRMYNSRTGVDIPIQQSYLWYGSNNGDDGQASGAYIFRPNGSPPTIVSRSVPYKVIRGPLVDEIHQIFSSWIYQVTRLYKDKDHAEIEFTIGPIPTDDGVGKEVITQITANMATNKEFYTDSDGRDFLKRIRDHRDDWPLQVTQPVAGNYYPLNLGIYIEDQKSELSVLIDRATGGASIKDGEVELMLHRRILHDDGRGVGEALDEQVCLNNFTCEGLTVRGNYYIGIHKLGAGSRWRRTTGQEVYSPLLLAFTHESFENWKSSHLTEGTVLDTSYSLPPNVALITLQELDGGAVLFRLAHLYEPNEDVEYSTLAKVELKKLFAKKQIKELKEVNLSANQEKSEIKKMSWKVEGDKKQEPQPLRGGPVNTADYVVELGPMEIRTFLLQF*	1017

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod05g0164	1016	Gene3D	Glycoside hydrolase family 38, central domain	329	407	IPR037094	GO:0004559\|GO:0006013
	Dod05g0164	1016	SMART	Alpha_mann_mid_2	365	440	IPR015341	GO:0004559\|GO:0006013
	Dod05g0164	1016	Gene3D	Glycoside hydrolase 38, N terminal domain	45	328	IPR027291	-
	Dod05g0164	1016	Gene3D	-	897	1016	-	-
	Dod05g0164	1016	SUPERFAMILY	Families 57/38 glycoside transferase middle domain	365	465	IPR028995	-
	Dod05g0164	1016	PANTHER	ALPHA-MANNOSIDASE	16	1016	-	-
	Dod05g0164	1016	Pfam	Glycosyl hydrolases family 38 N-terminal domain	46	360	IPR000602	GO:0004559\|GO:0006013
	Dod05g0164	1016	Coils	Coil	941	975	-	-
	Dod05g0164	1016	Pfam	Alpha mannosidase middle domain	365	458	IPR015341	GO:0004559\|GO:0006013
	Dod05g0164	1016	CDD	GH38N_AMII_LAM_like	45	323	-	-
	Dod05g0164	1016	Gene3D	-	608	874	-	-
	Dod05g0164	1016	SUPERFAMILY	Glycoside hydrolase/deacetylase	34	362	IPR011330	GO:0005975
	Dod05g0164	1016	Gene3D	-	476	587	IPR013780	-
	Dod05g0164	1016	Pfam	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	908	1013	IPR041147	-
	Dod05g0164	1016	PANTHER	ALPHA-MANNOSIDASE	16	1016	-	-
	Dod05g0164	1016	Gene3D	Glycoside hydrolase family 38, central domain	408	464	IPR037094	GO:0004559\|GO:0006013
	Dod05g0164	1016	SUPERFAMILY	Galactose mutarotase-like	474	1016	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Dod05g0164	1016	Pfam	Glycosyl hydrolases family 38 C-terminal domain	612	825	IPR011682	GO:0004559\|GO:0006013

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod05g0164	Dod-Chr5	2075119	2086732	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod05g0164	27	963	Glycoside Hydrolase	AT3G26720	59.830	0.0	1175

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod05g0164	K01191		-	gmx:100775419	1746.87

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod02g0437	02	5780513	5788129	Dod05g0164	05	2075119	2086732	PCT