Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0113 ATGGCCACCACCGCCACCGCAACCAGAAGATCCCTCCCATTCCTCAAACACTACCTCTCCACGGTGGTCAGACCCCAATTCTCCAGATCCGTAACCTACATGCACCGCCCCGGCGACGGCTCCACCCACCCGGTAACCCTCATCCCGGGCGACGGCATCGGCCCACTCGTCACCGGCGCCGTTGAGCAAGTCATGGAGGCCATGCACGCCCCACTCTCCTTCGAGAAGTTCGACGTCCACGGACACCTGAAATCGGTCCCTCATGAGGCCCTCGAATCGATTCGGAAAAACAAGGTTTGCCTTAAGGGTGGCCTCGTTACCCCTATGGGAGGAGGCGTGAGCTCCCTCAACGTTCAGCTGAGGAAGGAGCTCGATCTTTATGCGTCGCTCGTCAATTGCTTCAATCTACCTGGGTTGCCCACGAAGCATGACAATGTTGACATTGTTGTGATTAGGGAGAATACCGAAGGTGAGTACGCCGGGCTCGAACACGAGGTGGTTCCTGGCGTCATTGAAAGCCTCAAGGTAATAACCAAGTTCTGTTCAGAGCGTATTGCTAAATATGCATTTGAGTATGCATACCTGAATAACAGAAAGAAAGTGACTGCCGTGCACAAAGCAAATATTATGAAGCTTGCCGATGGTTTATTCTTGGAATCTTGTAGAGAGGTTGCCACAGAATATCCTGCAATCCAGTATGACGAAATTATTGTGGATAACTGCTGTATGCAGCTTGTTTCAAAGCCTGAGCAGTTTGATGTCATGGTAACCCCCAATCTTTATGGAAATCTGGTTGCAAATACTGCAGCAGGCATTGCTGGAGGCACTGGAGTCATGCCAGGAGGTAATGTTGGAGCTGAGCATGCTGTGTTTGAGCAAGGAGCTTCAGCAGGGAATACTGGTAATGATAAAATTGTGGCACAAAAGTCAGCCAACCCAGTGGCACTTCTTCTCTCTTCTGCTATGATGCTTAGGCATCTCCAGTTTCCTGCATTCGCTGACAGATTAGAAACTGCTGTGGCAAGAGTCATTCTAGAGGGCAAATACAGGACAAAGGACCTTGGAGGGAGAAGCACCACCCAGGAGGTTGTTGATGCAGTTATAAATGCTTTAGATTGA 1119 0.5031 MATTATATRRSLPFLKHYLSTVVRPQFSRSVTYMHRPGDGSTHPVTLIPGDGIGPLVTGAVEQVMEAMHAPLSFEKFDVHGHLKSVPHEALESIRKNKVCLKGGLVTPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTKHDNVDIVVIRENTEGEYAGLEHEVVPGVIESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATEYPAIQYDEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGAEHAVFEQGASAGNTGNDKIVAQKSANPVALLLSSAMMLRHLQFPAFADRLETAVARVILEGKYRTKDLGGRSTTQEVVDAVINALD* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0113 372 Pfam Isocitrate/isopropylmalate dehydrogenase 45 367 IPR024084 -
Dod05g0113 372 SMART Iso_dh_2 44 367 IPR024084 -
Dod05g0113 372 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 26 370 - -
Dod05g0113 372 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 41 371 IPR004434 GO:0006099
Dod05g0113 372 Gene3D Isopropylmalate Dehydrogenase 26 370 - -
Dod05g0113 372 PANTHER NAD-DEPENDENT ISOCITRATE DEHYDROGENASE C,1 26 370 - -
Dod05g0113 372 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 41 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0113 Dod-Chr5 1604800 1609842 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0113 K00030 - gmx:100800050 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0386 02 5178607 5183975 Dod05g0113 05 1604800 1609842 PCT