Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2644 ATGTCTAGGGTTTTGGCTCAGTCAATTAATGTACCTGGCCTATTGGCTGGGCAAAGGCATGGTCAACATAAGGGTTCAGGAAAATCAAAAAGATCTATCAAAATGATGTCTGCCTTACGAATGCCTGGAATAAGGCTGACAAATTTCTCAGGGTTACGTGCTTCTAATCCTTTGGATACTATGTTGAGACCTGGACAAGATTTTCATTCAAAGGTGTTAACTGCTACTTCTTCAAGGAGAGCAAGGGCTAGCAGATGCATACCTAAAGCTATGTTTGAGCGGTTTACAGAGAAAGCAATCAAAGTAATAATGCTAGCCCAGGAGGAAGCAAGACGGCTTGGTCACAATTTTGTTGGAACAGAACAGATTTTGTTGGGCCTTATTGGGGAAGGCACTGGTATTGCTGCTAAGGTTCTAAAGTCTATGGGAATTAACCTTAAAGATGCACGTGTAGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGATTTGTTGCTGTTGAAATTCCATTTACTCCTCGTGCAAAGCGTGTTTTGGAACTCTCACTGGAAGAGGCTCGCCAACTTGGACATAACTACATTGGATCTGAGCACTTGCTTCTGGGTCTTCTTCGAGAGGGTGAAGGTGTAGCAGCACGTGTTCTTGAAAACCTGGGTGCCGATCCTACTAATATTCGCACTCAGGTTATTCGCATGGTTGGTGAGAGCGCAGACAGTGTTGGTGCTACTGTTGGCCCAGGAAGTAGTAGCAATAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACCAAGTTAGCAGAGGAGGGAAAATTGGATCCTGTTGTGGGAAGGCAGCAACAAATTGAACGCGTCACTCAAATTTTAGGTCGTCGTACCAAAAATAATCCTTGCCTCATTGGAGAACCTGGTGTTGGGAAGACAGCTATTGCTGAAGGGCTTGCCCAACGTATTGCAAATGGTGATGTTCCGGAAACCATAGAGGGAAAGAAGGTTATAACCCTTGATATGGGTCTGCTTGTAGCTGGAACAAAATATCGTGGAGAATTTGAGGAGAGATTAAAGAAACTAATGGAGGAAATCAAACAGAGTGATGAGATAATACTATTTATTGATGAAGTGCACACTCTGATTGGAGCAGGAGCAGCTGAAGGGGCAATTGATGCTGCAAACATATTAAAACCAGCTCTTGCCAGAGGTGAATTGCAGTGTATAGGAGCCACCACACTGGATGAATACAGAAAGCACATTGAAAAAGATCCAGCTTTGGAAAGACGATTCCAGCCAGTTAAAGTGCCAGAGCCAACTGTGGATGAAACCATACAAATATTGAAAGGACTTAGAGAGCGCTATGAAATTCATCACAAGCTCCGCTATACTGATGATGCTCTCATAGCTGCTGCACAGCTGTCACACCAATATATCAGTGATCGATTTTTGCCCGATAAAGCTATAGATTTACTTGATGAAGCTGGTTCCCGTGTCCGGCTTCAACATGCACAGTTACCTGAAGAAGCAAGAGAGCTTGACAAGGAGGTCAGGCAGATTGTGAAGGAGAAAGAAGAAGCTGTTCGGAACCAAGACTTTGAGAAGGCTGGAGAGCTAAGAGATAAAGAAATGGATCTAAAGGCACAGATATCAGCACTTGTAGAGAAAGGCAAAGAGATGAGCAAGGCAGAGAGTGAGGCAGGAGATGGAGGTCCAGTTGTAACTGAAGTTGACATACAACATATTGTCTCCTCCTGGACTGGTATTCCTGTTGAGAAAGTATCAACAGATGAATCTGATCGCCTTCTCAAGATGGAAGAGACCTTACACAAGAGAGTCATTGGTCAGGATGAAGCAGTAAAAGCCATTAGCCGTGCTATACGTCGAGCCCGGGGAGGCCGCAAAATAGGATTCGACCTTGATTATGATGAGAAGGATAGCAGTTATACCCGAATCAAGAGCTTGGTGACTGAGGAGCTGAAGCAATACTTCAGGCCAGAGTTTTTGAATAGGCTTGATGAAATGATTGTCTTCAGGCAACTCACAAAACAGGAGGTTAAGGAGATAGCTGACATAATGCTGAAGGAGGTCTTTGAGAGGCTCAAGGCTAAGGAAATCGAACTTTCGGTGACAGAGAGATTTAGGGAGAGAGTGGTTGACGAAGGTTATAATCCTAGTTACGGGGCAAGGCCTCTAAGAAGAGCCATAATGCGACTTTTGGAGGACAGCATGGCAGAGAAGATGCTCGCTAGAGAGATTAAAGAGGGAGACTCTGTCATTGTGGATGCTGATTCTGATGGCAATGTGATTGTGCTCAATGGTAGCAGTGGTGCCCCGGAGTCACTACCCGAGGCTCTTCCCGTGTAA 2352 0.4464 MSRVLAQSINVPGLLAGQRHGQHKGSGKSKRSIKMMSALRMPGIRLTNFSGLRASNPLDTMLRPGQDFHSKVLTATSSRRARASRCIPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESADSVGATVGPGSSSNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDDALIAAAQLSHQYISDRFLPDKAIDLLDEAGSRVRLQHAQLPEEARELDKEVRQIVKEKEEAVRNQDFEKAGELRDKEMDLKAQISALVEKGKEMSKAESEAGDGGPVVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARGGRKIGFDLDYDEKDSSYTRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKQEVKEIADIMLKEVFERLKAKEIELSVTERFRERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDADSDGNVIVLNGSSGAPESLPEALPV* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2644 783 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 76 628 - -
Dod04g2644 783 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 626 783 - -
Dod04g2644 783 Pfam Clp amino terminal domain, pathogenicity island component 182 233 IPR004176 -
Dod04g2644 783 Pfam Clp amino terminal domain, pathogenicity island component 106 158 IPR004176 -
Dod04g2644 783 Gene3D - 631 674 IPR027417 -
Dod04g2644 783 Gene3D - 437 581 - -
Dod04g2644 783 Coils Coil 346 366 - -
Dod04g2644 783 SUPERFAMILY Double Clp-N motif 93 233 IPR036628 -
Dod04g2644 783 Coils Coil 505 525 - -
Dod04g2644 783 Gene3D - 676 773 - -
Dod04g2644 783 Gene3D - 91 239 IPR036628 -
Dod04g2644 783 Gene3D - 244 435 IPR027417 -
Dod04g2644 783 ProSiteProfiles UVR domain profile. 509 544 IPR001943 GO:0005515
Dod04g2644 783 Gene3D - 587 630 IPR027417 -
Dod04g2644 783 Pfam C-terminal, D2-small domain, of ClpB protein 676 756 IPR019489 -
Dod04g2644 783 Pfam ATPase family associated with various cellular activities (AAA) 297 413 IPR003959 GO:0005524|GO:0016887
Dod04g2644 783 ProSiteProfiles Clp repeat (R) domain profile. 92 234 IPR004176 -
Dod04g2644 783 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 252 529 IPR027417 -
Dod04g2644 783 Pfam AAA lid domain 435 537 IPR041546 -
Dod04g2644 783 CDD AAA 275 427 - -
Dod04g2644 783 ProSitePatterns Chaperonins clpA/B signature 1. 387 399 IPR018368 GO:0005524
Dod04g2644 783 Gene3D UVR domain 501 565 - -
Dod04g2644 783 PANTHER ATP-DEPENDENT CLP PROTEASE 626 783 - -
Dod04g2644 783 PANTHER ATP-DEPENDENT CLP PROTEASE 76 628 - -
Dod04g2644 783 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 595 758 IPR027417 -
Dod04g2644 783 SMART AAA_5 292 432 IPR003593 -
Dod04g2644 783 SMART ClpB_D2_small_2 676 766 IPR019489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2644 Dod-Chr4 50333968 50339278 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2644 K03696 - gmx:100804035 1108.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2644 04 50333968 50339278 Dod09g0092 09 1269913 1274224 PCT