Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2517 ATGCTGAGCTCTGATGAAGGCGATATTGATGAATTCTTTGACTCAGTGGATAGTTTGTCATCGCAAGATTCTTTTTTAGGCAAAGGAGATTTTGGTTCTGAGTGCTGTGGTGGTTGTGATTATGAAATTTGGGTGAATGAGCCGGTGAGTGTGAAGGAAAGAAGGGAGCGGTTTCTGCAGGGTATGGGTTTAGCTGATACTTGTTCTTGCAAGGTGTGTTCACAAGAGGAAATGAAGAACTTTGGTGCCTCATCAATCAGCTTGGGATTGGATAGGGTCAGGGAGTGCAGTGGAGCAGCCTTAAATGCTTGCATTTCTCCTGCTTCCGAAGCATCTGTGAAGTTGGTTCAGTCTGAATTGAAAGTGCCTTCTGAAGCAAAAGTCTTGTTCGATGAATTGAAAGAGAGTCCTCCAGATGCAAGTTTTCAAGGGGAAGTGCATGAGCTCTCTTCTACAGCTCAGGAGCACAAAGATAGAGAACCTGAGGCCCAAGAAGGATTTCAGGATTTTGATCTGGGTGGCAAAAAGAACAGGAAAAATTGGTGGAAGCGCTTTGTAAACATCAGGAAAGGTAGTGAAGGAAAAATCAGATCAAAGTTGAATGCAGCGACCAATAAAACTCCTAGAGTAAAGGTAAGACAGAATAAAAAGAGGTGGCTGGAGTTCAGTGGGCTATACATTGGACAACAAATTAAAGCACACAAAGGCCTAATATGGACTGTGAAATTTAGTCCTAATGGTCAGTATTTAGCCAGTGGAGGTGAAGATGGTGCTGTGCGCATATGGCATGTTGTATCGCTGGATACATCTGGTATTTGTTTCGGTGAAGAAGACAATCCTGCTGGCAAAGTGAAACATGACAACTCTTCTCCTTGGAAGAAACATTCAAGCCAATCCTTTATTTTCCCTCCAAATAAGATTTACCAAATTGATAAATCACCATTGCAAGAATTTTTTGGTCATTCCAGTGATGTCTTGGATCTGGCTTGGTCTAATTCAGAGTCAAATCTTCTCCTCTCATCTTCTATGGATAAAACTGTTCGCTTGTGGCAAATTGCTTCTAGTCAATGTCTAAGTGTTTTCCATCACACTGACTATGTGACATGCATTCAGTTCAACCCTGTTGATGAAAATTACTTCATTAGTGGATCCATAGATGGCAAAGTTCGAATATGGGGAATACATGAAGAGCGAGTTATTGACTGGACAGATATACATGATGTCATAAGTGCTATAAGTTACCAGCAAGATGGAAAAGGATTTGTAGTAGGTTCCATTACTGGCACTTGTTGCTTCTATGTTGCCTCAGGAAAATATTTCCAGCTTGAGGCGCAGATACATGTCCATGGAAAGAAGAAAGCGGCAAGCAACAAGATTACTGGCATTCAGGTTTCCAGTAAAAATTGCCACAGAATTATGATCACATCAGAAGATTCAAAAATTCGTGTATTTGATGGTGTTGAACTTGTTCAGAAATACACAGGCCTCCCAAAGTCAGGAACTCAGATGTCCGGTTCATTTACATCTAGTGGAAAACATATAATCTCAGTTGGAAAGGACTCCCACGTGTATATTTGGAACTTCAGTGGCTTGAGAAACGCTTCTTCCAAGAACACAAAATCTGAGCACTCCTGCGAGTACTTTTTCTCCAAGGGGGTCACTGTCGCGATACCTTGGCCAGGCATGAAAGCAGAATCAAAAGTCTCTAACAGTAATTCAGCTTGCTGTTCTTCTGAAACACCAACCCAACCAGAGGTTGCACCTAAGGTTAGAGAATCGGAGCGCTTTTCTCTCAGTAATTGGTTCTCCATTGATGGTTCATGCCGAGGTTCCACAACATGGCCTGAGGAGGAACTTCCAAGCTGGGATTTGCCTCTTGCAGCAGAAGATGAATATGATGAGCAGCAGCAGCAGCAGCAGCAATGTCACAAAGATGGTTTATCAGAGACATGGGGCCTATCAATTGTGGCAGCTGGTTGTGATGGAACTATCAAGACATTTCACAACTTTGGATTGCCCGTTAGGCTTTAG 2031 0.4244 MLSSDEGDIDEFFDSVDSLSSQDSFLGKGDFGSECCGGCDYEIWVNEPVSVKERRERFLQGMGLADTCSCKVCSQEEMKNFGASSISLGLDRVRECSGAALNACISPASEASVKLVQSELKVPSEAKVLFDELKESPPDASFQGEVHELSSTAQEHKDREPEAQEGFQDFDLGGKKNRKNWWKRFVNIRKGSEGKIRSKLNAATNKTPRVKVRQNKKRWLEFSGLYIGQQIKAHKGLIWTVKFSPNGQYLASGGEDGAVRIWHVVSLDTSGICFGEEDNPAGKVKHDNSSPWKKHSSQSFIFPPNKIYQIDKSPLQEFFGHSSDVLDLAWSNSESNLLLSSSMDKTVRLWQIASSQCLSVFHHTDYVTCIQFNPVDENYFISGSIDGKVRIWGIHEERVIDWTDIHDVISAISYQQDGKGFVVGSITGTCCFYVASGKYFQLEAQIHVHGKKKAASNKITGIQVSSKNCHRIMITSEDSKIRVFDGVELVQKYTGLPKSGTQMSGSFTSSGKHIISVGKDSHVYIWNFSGLRNASSKNTKSEHSCEYFFSKGVTVAIPWPGMKAESKVSNSNSACCSSETPTQPEVAPKVRESERFSLSNWFSIDGSCRGSTTWPEEELPSWDLPLAAEDEYDEQQQQQQQCHKDGLSETWGLSIVAAGCDGTIKTFHNFGLPVRL* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2517 676 PRINTS G protein beta WD-40 repeat signature 380 394 IPR020472 -
Dod04g2517 676 PRINTS G protein beta WD-40 repeat signature 338 352 IPR020472 -
Dod04g2517 676 PRINTS G protein beta WD-40 repeat signature 250 264 IPR020472 -
Dod04g2517 676 SUPERFAMILY WD40 repeat-like 225 530 IPR036322 GO:0005515
Dod04g2517 676 MobiDBLite consensus disorder prediction 150 172 - -
Dod04g2517 676 MobiDBLite consensus disorder prediction 136 172 - -
Dod04g2517 676 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 231 264 - -
Dod04g2517 676 ProSiteProfiles Trp-Asp (WD) repeats profile. 318 360 IPR001680 GO:0005515
Dod04g2517 676 PANTHER WD REPEAT DOMAIN 44 1 676 IPR040324 -
Dod04g2517 676 ProSiteProfiles Trp-Asp (WD) repeats profile. 231 264 IPR001680 GO:0005515
Dod04g2517 676 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 360 392 - -
Dod04g2517 676 Pfam WD domain, G-beta repeat 356 392 IPR001680 GO:0005515
Dod04g2517 676 Pfam WD domain, G-beta repeat 231 262 IPR001680 GO:0005515
Dod04g2517 676 Pfam WD domain, G-beta repeat 313 350 IPR001680 GO:0005515
Dod04g2517 676 Gene3D - 223 552 IPR015943 GO:0005515
Dod04g2517 676 SMART WD40_4 224 263 IPR001680 GO:0005515
Dod04g2517 676 SMART WD40_4 486 527 IPR001680 GO:0005515
Dod04g2517 676 SMART WD40_4 354 393 IPR001680 GO:0005515
Dod04g2517 676 SMART WD40_4 395 434 IPR001680 GO:0005515
Dod04g2517 676 SMART WD40_4 445 485 IPR001680 GO:0005515
Dod04g2517 676 SMART WD40_4 311 351 IPR001680 GO:0005515
Dod04g2517 676 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 318 356 - -
Dod04g2517 676 ProSiteProfiles Trp-Asp (WD) repeats profile. 360 402 IPR001680 GO:0005515
Dod04g2517 676 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2517 Dod-Chr4 49010462 49016755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2517 315 426 Miscellaneous Gene Families AT5G08390 26.316 4.06e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2517 K20241 - gmx:100819135 964.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2517 04 49010462 49016755 Dod09g1796 09 39557967 39561345 PCT