Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2330 ATGCAACACATCGCATGCAGCAACAGCACTGGCATTGAAGCAGTTGTCATCGTCATCATCTCATGCCTCGGTTTAATCATCACACTCAAACACACGATGTCTTTCGCAACAAGGATTTACAAAATGTGTTTCAGATCTGAGAAGGACCTAATCAGGAGCTACGGCTCATGGGCCATGGTCACCGGAGCCACCGACGGCATCGGAAGAGCCTTGGCCGAGCAGCTAGCAGAGAGAGGCCTCAACCTCGTCCTTGTCAGCAGAAGCTCCAAGAGGCTCGAAACCGTTGCAAGTGAAATCCAAGCAAAACATCCTCGTACCCACGTGGAGGTCATCCAGGTGGACTTTTCCGGCGACATGTCAGGGGGTCTCGGGCGAATAGCGGCGGCGGCCCGTGATTTGGATCTGGGGGTGGTGATCAACAACGCGGGGATCACGTACCCTGGGGCCATGTTCTTTGACGAGGTGGAGGAGAAGGTGTGGATGGAGATTGTTAGGGTCAACGTGGCAGGCACCACAAGGGTGACAAAAGCTGTGTTGCCTGGGATGATGAAAAGGAAAAGGGGTGCAATCGTTAACATTGGCTCTGGGGCTTCCGTGGTTCTGCCTTCGCATCCTCTCTATACCGTCTATGCTGCTACAAAGGCTTATGTGGATCAGTTATCAAGGTCTCTGCACGTGGAGTATAAACGATATGGCATTCACGTTCAGTGTCAGGTACCGCTGTATGTTGCAACGAAGATGGTGTCGAAGGTAGCATCCATAAAGGGAGAGTCGCTCTTCGTTCCAACGCCTGAGGGTTACGCGAGGGCTGCGATTCGTGAGATTGGAGAAGAAGCAAGGTGCACACCTTATTGGGCTCACTTAATTCAGTGGTGCTTCGCAGCCTTAGTCCCAAGCCCCCTACTCGATGCTTGGCGCTTCTCCATCGGCATGCGCCGCAGGAAGCAGGCGAGAATTATTAGCGACCACATCCATCGCCACAAGCAGGAACAATGGTCTGCGTGA 1005 0.5313 MQHIACSNSTGIEAVVIVIISCLGLIITLKHTMSFATRIYKMCFRSEKDLIRSYGSWAMVTGATDGIGRALAEQLAERGLNLVLVSRSSKRLETVASEIQAKHPRTHVEVIQVDFSGDMSGGLGRIAAAARDLDLGVVINNAGITYPGAMFFDEVEEKVWMEIVRVNVAGTTRVTKAVLPGMMKRKRGAIVNIGSGASVVLPSHPLYTVYAATKAYVDQLSRSLHVEYKRYGIHVQCQVPLYVATKMVSKVASIKGESLFVPTPEGYARAAIREIGEEARCTPYWAHLIQWCFAALVPSPLLDAWRFSIGMRRRKQARIISDHIHRHKQEQWSA* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2330 334 Gene3D - 50 287 - -
Dod04g2330 334 PIRSF 11-beta-HSD1 5 319 - -
Dod04g2330 334 CDD 17beta-HSD1_like_SDR_c 55 299 - -
Dod04g2330 334 Pfam short chain dehydrogenase 57 251 IPR002347 -
Dod04g2330 334 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 16 317 - -
Dod04g2330 334 PRINTS Glucose/ribitol dehydrogenase family signature 210 229 IPR002347 -
Dod04g2330 334 PRINTS Glucose/ribitol dehydrogenase family signature 231 248 IPR002347 -
Dod04g2330 334 PRINTS Glucose/ribitol dehydrogenase family signature 57 74 IPR002347 -
Dod04g2330 334 PRINTS Glucose/ribitol dehydrogenase family signature 182 198 IPR002347 -
Dod04g2330 334 PRINTS Glucose/ribitol dehydrogenase family signature 133 144 IPR002347 -
Dod04g2330 334 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 54 315 IPR036291 -
Dod04g2330 334 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 210 229 IPR002347 -
Dod04g2330 334 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 144 IPR002347 -
Dod04g2330 334 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 188 196 IPR002347 -
Dod04g2330 334 PANTHER RH59310P 16 317 - -
Dod04g2330 334 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 197 225 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2330 Dod-Chr4 47187044 47194658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2330 19 314 Lipid Metabolism Gene Families AT1G24470 53.716 6.62e-117 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2330 K10251 - cit:102621211 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2330 04 47187044 47194658 Dod04g0545 04 7856637 7860102 PCT