Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0545 ATGGAATGCTGCATACTCAACCGCCTCAAGACCCAGCCCCTGTGGTTCGCCGTCCTCTTCGCCCTCGGCGCCCTCACCCTCCTCAGGTTCCTCTTCATCCTCCTCAGCTGGGCCTACGTCAACTTCCTCAGGCCCGCCAAGGACCTCAAGAAATACGGATCCTGGGCCCTCGTAACGGGCCCCACCGACGGCATCGGGAAGGGCTTCGCCTTCCAGCTGGCCCGCAAGGGCCTCAACCTCGTCCTCGTGGGCCGAAGCCCGGACAAGCTCGCCGACGTGTCATCCTCCGTCAAGGCCAAATTCGCATCAGTCGAGGTCAAGACAGTCGTCGTCGATTTCTCCGGGGATCTCGACGAAGGCATGGGGAGGATCCGAGAAGCAATCGAAGGGTTGGACGTTGGGGTTCTGATTAACAACGTTGGGGTTTCGTACCCTTACGCGAGGTTCTTCCATGAGGTGGACGAGGGGCTCTTGAGGAATTTGATTAAGGTGAATATTGAAGGCACTACGAAGGTCACGCAAACGGTGCTTCCGGGGATGTTGAAGAGGAAGAAAGGTGCGATTGTTAACATTGGGTCTGGTGCTGCCATTGTGATCCCTTCGGATCCGCTTTACGCTGTTTATGCTGCTTCCAAAGCGTACATCGATCAATTTTCGAGAAGTCTGTATGTGGAGTACAAGAAGAGTGGGATTGACGTGCAGTGTCAGGTTCCTTTGTATGTGGCAACAAAGATGGCATCAATCAGAAGATCTTCATTCTTTGTTCCATCAACAGATGGATATGCCGGAGCGGGTGTGAGATGGATCGGCTACGATGCTCGCTGCACACCATACTGGCCTCATACCCTCCTTTGGGGCTTGGCAAGCTTATTGCCTGAGTCCATCGTTGATGCCTGGCGCCTGTGGTTTTGCCTCGGGATTCGAAAGAGGGGTCAGCTTAAAGAGTCAAGGAAGAAGGAATAG 963 0.5452 MECCILNRLKTQPLWFAVLFALGALTLLRFLFILLSWAYVNFLRPAKDLKKYGSWALVTGPTDGIGKGFAFQLARKGLNLVLVGRSPDKLADVSSSVKAKFASVEVKTVVVDFSGDLDEGMGRIREAIEGLDVGVLINNVGVSYPYARFFHEVDEGLLRNLIKVNIEGTTKVTQTVLPGMLKRKKGAIVNIGSGAAIVIPSDPLYAVYAASKAYIDQFSRSLYVEYKKSGIDVQCQVPLYVATKMASIRRSSFFVPSTDGYAGAGVRWIGYDARCTPYWPHTLLWGLASLLPESIVDAWRLWFCLGIRKRGQLKESRKKE* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0545 320 PRINTS Glucose/ribitol dehydrogenase family signature 55 72 IPR002347 -
Dod04g0545 320 PRINTS Glucose/ribitol dehydrogenase family signature 131 142 IPR002347 -
Dod04g0545 320 PRINTS Glucose/ribitol dehydrogenase family signature 180 196 IPR002347 -
Dod04g0545 320 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Dod04g0545 320 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Dod04g0545 320 PIRSF 11-beta-HSD1 4 314 - -
Dod04g0545 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 53 310 IPR036291 -
Dod04g0545 320 Gene3D - 49 264 - -
Dod04g0545 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 194 IPR002347 -
Dod04g0545 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 142 IPR002347 -
Dod04g0545 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 227 IPR002347 -
Dod04g0545 320 CDD 17beta-HSD1_like_SDR_c 53 295 - -
Dod04g0545 320 PANTHER RH59310P 4 319 - -
Dod04g0545 320 PANTHER BETA-KETOACYL REDUCTASE 1-RELATED 4 319 - -
Dod04g0545 320 Pfam short chain dehydrogenase 55 247 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0545 Dod-Chr4 7856637 7860102 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0545 1 320 Lipid Metabolism Gene Families AT1G67730 63.438 7.87e-163 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0545 K10251 - gmx:100817128 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0545 04 7856637 7860102 Dod04g0545 04 7856637 7860102 ECH
Dod04g2330 04 47187044 47194658 Dod04g0545 04 7856637 7860102 PCT