Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0620 ATGGCGTGCAAGAGGCTAAAGACCTTAGTTCTTGACTCGATGGTTTTATCAAAAGCATCCAGCAAAACATTCTCAGTCATATCCAAAAACTGGTCCGAATCCTCTCACCGCTTCCTCAAACAGTGCGCTGATGCGGGAAACATCGAAGCATGCTACACTCTCGGCATGATTCGGTTCTACTGTTTGGAAAACAGGGAGAGCGGCAGGTCGCTGATATCCAAGGCGGCAATGAGGTCCCACGCGCCAGCGCTGTACTCGCTGGCGATAATACAGTTCAACGGCAGCGGAGGATCCAAGGACGACAAGGACCTAAGAGCTGGAGTTGCCCTCTGCGCACGCGCCGCGTTCCTCGGACACATAGACGCACTCCGCGAGCTTGGGCATTGCTTACAGGACGGTTACGGCGTAAAACAGAATGTCATGGAAGGGAGACGGTTTCTCGTGCAAGCCAACGCGCGTGAACTCGCATCTGTTTGGCCCAACAACCAGTCACTCACATGGAGCGTCATCGCAGGCCCAAGCCCGGGCCCGGGCCCGAATATTGTTCCGAACCAGAATCCGTCGAGGCTGTCGTTTCTCGCGGGGTGTCCGCTGCTGAGCGATTACGGATGCAACGTGCCGGCGCGGGAGCCTCATCCGGCGAACAGGTTCATGATTGAGTGGTTTGCGGGTAAGGGAGGGGTGGTGCCCGGGCTTTACAGGAGGCTGTGCTCGCATGTGGGCTGCGGGAGGCCCGAGACGAGGAAGAGAGAGTTTAGAAGGTGTTCGGTGTGTGGTGCGGCGAGCTATTGCTCACGCGCTTGCCAGGCGCTTGATTGGAAGAGTCGGCACAAGGTGGAGTGTGCTCCTGTTGAGAGGTGGGTCGACGACGATGACGACGGTGATGATGGTGGTGCTGGTGAGGGTGACGGCGGCGAGGTGGTGGCGCCGGTGATGGCTGATAGCTAG 948 0.5791 MACKRLKTLVLDSMVLSKASSKTFSVISKNWSESSHRFLKQCADAGNIEACYTLGMIRFYCLENRESGRSLISKAAMRSHAPALYSLAIIQFNGSGGSKDDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVKQNVMEGRRFLVQANARELASVWPNNQSLTWSVIAGPSPGPGPNIVPNQNPSRLSFLAGCPLLSDYGCNVPAREPHPANRFMIEWFAGKGGVVPGLYRRLCSHVGCGRPETRKREFRRCSVCGAASYCSRACQALDWKSRHKVECAPVERWVDDDDDGDDGGAGEGDGGEVVAPVMADS* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0620 315 Gene3D - 232 286 - -
Dod04g0620 315 Gene3D Tetratricopeptide repeat domain 28 165 IPR011990 GO:0005515
Dod04g0620 315 SUPERFAMILY HIT/MYND zinc finger-like 233 286 - -
Dod04g0620 315 MobiDBLite consensus disorder prediction 288 315 - -
Dod04g0620 315 SUPERFAMILY HCP-like 34 150 - -
Dod04g0620 315 PANTHER MYND DOMAIN-CONTAINING 2 313 IPR044508 -
Dod04g0620 315 PANTHER HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN 2 313 - -
Dod04g0620 315 Pfam MYND finger 242 281 IPR002893 -
Dod04g0620 315 ProSiteProfiles Zinc finger MYND-type profile. 239 281 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0620 Dod-Chr4 8973164 8975329 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0620 - - adu:107468872 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0620 04 8973164 8975329 Dod04g0620 04 8973164 8975329 ECH
Dod04g0620 04 8973164 8975329 Dod04g2029 04 43744307 43746860 PCT