Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0213 ATGGCCATGTCAATGTCACCCCTCTGCAAGATTTTTCTCTTCTTCTTCCTCTTCTCTTCTGTTACCCACTCTGCACACCTCAAACATGCACACAAACACAATCACAACACCACCACCACCAAGACATTCTCGGTGTCTTTCCCACTCACTTCTCTCCCTCTCTCCACCAACACAACCTCGAAGATACTATCTTCCTCTCTCATCTTCTCGTCAAGAAACTCCAGCAAGCCTTCTTCTTCTTCCTCCTACAACTTCAAGTCTACATTCAAATACTCCATGGCACTCTTAGTGACCCTCCCCATTGGGACACCCCCACAGGCCCAACAAATGATCCTAGACACTGGAAGCCAACTCTCTTGGATTCAGTGCCACGACAAGAAGAACACAAAGCCACCACCACCACCCCCTACGTCGTCGTTTGACCCTTCACTCTCCTCCACCTTCTCCAACTTACCCTGCACCCACCCTCTCTGCAAGCCCCAAATTCCCGATTTTACCCTCCCAACATCATGCGACCAGAACCGCCTCTGCCACTACTCCTACTACTACGCCGACGGCACCTACGCCGAGGGCAATCTCGTCAGAGAGAAATTCACATTCTCCCCTTCCCTCTCCACCCCTCCCCTCATCCTCGGCTGCGCCACTTACTCCAGCGACGCCAGGGGCATTTTGGGAATGAACCACGGCCGCTTGTCCTTCGCTTCCCAAGGCAAAATCACGAAATTCTCTTACTGCGTCCCAATCCGACAGACCCGACCCGGATCCGCACCAACCGGGTCGTTCTACCTCGGTAACAACCCGAACTCCGTAGGGTTCAAGTACGTCCCGATGTTGACCTTTTCCCAGAGTCAACGCATGCCGAATCTCGACCCCTTGGCCTACACCGTCGCGATGAACGGAATCCGGATCGGCGGGAGGAGGCTGAGCATTTCTCCGGCGGTTTTCCGACCCGATGCTGGCGGGTCGGGACAGACCATGGTGGACTCTGGATCCGAATTCACTTACCTTGTTAGTGAGGCTTATGATAAGGTGAGGGAGGAGGTGGTGAGGGTTGTGGGGCCCAGGATGAAGAAGGGGTACGTGTACGGTGGAGTTGCTGACATGTGTTTCGATGCCCGTGATGGTGTTGAGATCGGACGGCTGATAGGGGACATGGTGTTTGAGTTTGAGAACGCGGTTGAGATCGTCGTTCCGAAGGAGAGGGTGCTCGCAGACGTGGGCGGTGGGGTCCACTGCGTTGGGGTTGCGAGCTCGGATAAATTGGGTGCGGCAAGTAACATCATAGGGAACTTCCACCAGCAGAATCTGTGGGTGGAGTTTGATCTCGCGAATCGCAGAGTGGGTTTCGGTGGTGCTGATTGTAGCAGGTTGGCTTGA 1377 0.5439 MAMSMSPLCKIFLFFFLFSSVTHSAHLKHAHKHNHNTTTTKTFSVSFPLTSLPLSTNTTSKILSSSLIFSSRNSSKPSSSSSYNFKSTFKYSMALLVTLPIGTPPQAQQMILDTGSQLSWIQCHDKKNTKPPPPPPTSSFDPSLSSTFSNLPCTHPLCKPQIPDFTLPTSCDQNRLCHYSYYYADGTYAEGNLVREKFTFSPSLSTPPLILGCATYSSDARGILGMNHGRLSFASQGKITKFSYCVPIRQTRPGSAPTGSFYLGNNPNSVGFKYVPMLTFSQSQRMPNLDPLAYTVAMNGIRIGGRRLSISPAVFRPDAGGSGQTMVDSGSEFTYLVSEAYDKVREEVVRVVGPRMKKGYVYGGVADMCFDARDGVEIGRLIGDMVFEFENAVEIVVPKERVLADVGGGVHCVGVASSDKLGAASNIIGNFHQQNLWVEFDLANRRVGFGGADCSRLA* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0213 458 Pfam Xylanase inhibitor C-terminal 293 449 IPR032799 -
Dod04g0213 458 Gene3D Acid Proteases 68 263 IPR021109 -
Dod04g0213 458 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 12 458 - -
Dod04g0213 458 Pfam Xylanase inhibitor N-terminal 96 253 IPR032861 -
Dod04g0213 458 Gene3D Acid Proteases 264 458 IPR021109 -
Dod04g0213 458 PANTHER ASPARTYL PROTEASE-RELATED 12 458 IPR001461 GO:0004190|GO:0006508
Dod04g0213 458 MobiDBLite consensus disorder prediction 124 143 - -
Dod04g0213 458 CDD pepsin_A_like_plant 96 454 IPR034161 -
Dod04g0213 458 ProSiteProfiles Peptidase family A1 domain profile. 95 450 IPR033121 -
Dod04g0213 458 SUPERFAMILY Acid proteases 96 456 IPR021109 -
Dod04g0213 458 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 110 121 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0213 Dod-Chr4 2602176 2604467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0213 63 457 Miscellaneous Gene Families AT1G44130 24.654 4.14e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0213 - - aip:107631248 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0213 04 2602176 2604467 Dod04g0213 04 2602176 2604467 ECH
Dod04g0213 04 2602176 2604467 Dod08g0848 08 10207178 10209217 PCT