Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2873 ATGGCCACACCAATGGTGCAGCAAGAAGCTGCCCCAGCAACAGCAAGCACTCCTAGGAAGAAAATGACCAAACAATTGACAGGGAAGCGTGATGATACGACCTTGCACTCAGCAGCAAGGGCAGGGAAATTGGATGTCATTAAGGACACAGTTGCTGGTGCTGAAGGGGGTCAACTGCGCGAGTTGTTGGCCAAGCAGAACCAAGCAGGGGAAACACCACTTTATGTTGCTGCTGAGTATGGTTATGCTGATTTGGTAAGGGAGATGATTCAGTATTATGATGTCTCCGATGCCGGAATTAAGGCAAGGAATGGTTTTGATGCACTCCACATTGCTGCCAAACAAGGGGATTTAGATGTGCTGAAGATCCTTATGGAGGCTCATTCTGAATTGTCAATGACTGTGGATCCATCCAACACCACAGCTTTGCACACAGCTGCAACACAAGGGCATACTGAGATAGTGAAGTTTCTGTTAGAGGCAGGTAGTAGCTTGGCAACCATTGCTAGAAGTAATGGGAAAACAGCTTTGCATTCTGCTGCAAGAAATGGACATTTGGAGGTTGTGAAAGCACTTCTGGAGAAGGAGCCCACGGTTGTGACGCGAACTGATAAGAAGGGACAGACTGCACTTCACATGGCAGTGAAGGGGCAAAGTCTTGAGGTGGTAGACGAGTTGATAAAAGTAGATCCCTCATCAATAAACATGGTTGATAATAAAGGTAACACGGCGTTGCACATAGCAACCAGGAAGGGCAGAGCTCAGATTGTTAAGTTGCTTCTTGGACAGACAGAAACAGACACGACAGCAGTTAATAGATCCGGTGAAAGTGCATTAGACACTGCTGAGAAGACCGGCAACTCGGTAGTCAAAGCCATTCTGCAGGAACACGGTGTTCAAAGTGCCAAAGCCATGAAGCCTCAGCCAACAACAGCAGTGCGCGAGTTGAAACAAACCGTGAGCGACATAAAGCACGAAGTCCACTACCAACTGGAACACACTCGCCAGACCAGAAAACGCGTCCAAGGCATCGCCAAACGCATCAACAAGATGCACGCCGAAGGGCTCAACAACGCAATAAACTCCACAACCGTTGTTGCGGTCCTCATTGCCACGGTTGCCTTTGCTGCTATCTTCACAGTTCCTGGCCAATTTGTTGATGATCCACATGATGTCCCTAAGGGGATGTCCCTTGGTGAAGCAAATATAGCCCCACAGGCCCCATTCATCATTTTCTTTGTCTTTGATTCCATTGCCCTCTTCATTTCGCTTGCAGTGGTTGTGGTGCAAACCTCAGTTGTAGTTATAGAGAGCAAAGCAAAGAAGCAAATGATGGCCATCATTAACAAGCTAATGTGGTTGGCCTGTGTGCTTATCACTGTGGCATTCTTGGCACTGTCATTTATAGTTGTGGGGAAGGATCAGAAGTGGCTTGCAATTGGAGTTACAGTTATAGGAACAACTATCATGGCTACAACATTGGGACTTATGTGTTATTGGGTCATTAGGCACCGCATTGAGGCCTCAAATTTGAGGAGTATGAGGAAATCTTCATTGGGAAGCAGGTCAAGGTCTTTTTCAGTGTCTGTTATGTCAGATTCTGAGCTACTTAACAGAATGTATGCGATTTAG 1632 0.4675 MATPMVQQEAAPATASTPRKKMTKQLTGKRDDTTLHSAARAGKLDVIKDTVAGAEGGQLRELLAKQNQAGETPLYVAAEYGYADLVREMIQYYDVSDAGIKARNGFDALHIAAKQGDLDVLKILMEAHSELSMTVDPSNTTALHTAATQGHTEIVKFLLEAGSSLATIARSNGKTALHSAARNGHLEVVKALLEKEPTVVTRTDKKGQTALHMAVKGQSLEVVDELIKVDPSSINMVDNKGNTALHIATRKGRAQIVKLLLGQTETDTTAVNRSGESALDTAEKTGNSVVKAILQEHGVQSAKAMKPQPTTAVRELKQTVSDIKHEVHYQLEHTRQTRKRVQGIAKRINKMHAEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFVDDPHDVPKGMSLGEANIAPQAPFIIFFVFDSIALFISLAVVVVQTSVVVIESKAKKQMMAIINKLMWLACVLITVAFLALSFIVVGKDQKWLAIGVTVIGTTIMATTLGLMCYWVIRHRIEASNLRSMRKSSLGSRSRSFSVSVMSDSELLNRMYAI* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2873 543 ProSiteProfiles Ankyrin repeat region circular profile. 172 195 - -
Dod03g2873 543 ProSiteProfiles Ankyrin repeat region circular profile. 138 165 - -
Dod03g2873 543 ProSiteProfiles Ankyrin repeat region circular profile. 104 132 - -
Dod03g2873 543 ProSiteProfiles Ankyrin repeat region circular profile. 206 228 - -
Dod03g2873 543 Gene3D - 168 342 IPR036770 -
Dod03g2873 543 ProSiteProfiles Ankyrin repeat region circular profile. 69 91 - -
Dod03g2873 543 PANTHER ANKYRIN REPEAT PLANT PROTEIN 9 539 - -
Dod03g2873 543 SMART ANK_2a 240 270 IPR002110 GO:0005515
Dod03g2873 543 SMART ANK_2a 69 98 IPR002110 GO:0005515
Dod03g2873 543 SMART ANK_2a 206 236 IPR002110 GO:0005515
Dod03g2873 543 SMART ANK_2a 172 202 IPR002110 GO:0005515
Dod03g2873 543 SMART ANK_2a 138 167 IPR002110 GO:0005515
Dod03g2873 543 SMART ANK_2a 104 133 IPR002110 GO:0005515
Dod03g2873 543 ProSiteProfiles Ankyrin repeat region circular profile. 240 261 - -
Dod03g2873 543 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Dod03g2873 543 Gene3D - 6 167 IPR036770 -
Dod03g2873 543 ProSiteProfiles Ankyrin repeat profile. 240 261 IPR002110 GO:0005515
Dod03g2873 543 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 9 539 - -
Dod03g2873 543 MobiDBLite consensus disorder prediction 1 31 - -
Dod03g2873 543 Pfam Domain of unknown function 354 470 IPR026961 -
Dod03g2873 543 Pfam Ankyrin repeats (3 copies) 99 165 IPR002110 GO:0005515
Dod03g2873 543 Pfam Ankyrin repeats (3 copies) 172 235 IPR002110 GO:0005515
Dod03g2873 543 Pfam Ankyrin repeat 241 272 IPR002110 GO:0005515
Dod03g2873 543 SUPERFAMILY Ankyrin repeat 34 299 IPR036770 -
Dod03g2873 543 ProSiteProfiles Ankyrin repeat profile. 69 91 IPR002110 GO:0005515
Dod03g2873 543 ProSiteProfiles Ankyrin repeat profile. 138 170 IPR002110 GO:0005515
Dod03g2873 543 ProSiteProfiles Ankyrin repeat profile. 206 228 IPR002110 GO:0005515
Dod03g2873 543 ProSiteProfiles Ankyrin repeat profile. 104 136 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2873 Dod-Chr3 60813078 60816896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2873 5 543 Miscellaneous Gene Families AT1G07710 71.823 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2873 - - gmx:100779230 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2873 03 60813078 60816896 Dod03g2873 03 60813078 60816896 ECH
Dod10g1678 10 37916444 37918876 Dod03g2873 03 60813078 60816896 ECH