Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2417 ATGCACACTCTCTCCCCGCCGTATTCCAACACTCTCGGCCATGCGATTCGGGCGCGTGACCCGAGCTTATACACTCGGGTCGCTAGGACCCAAATAACGGTTAAATGCGGGTATGGATTCGAATCCGCGAGCTTCTCGCAACAGGGATTCGGATGCACCCGCTCCGACTGGCAGAGCGCGTGCGCCATACTCTCCAGCAAGGTCGTCTCGCAGCAGGAGGACTCTCCCCCGGCCGCCGGCGGGGCCTCCGTAAACGGTCACAATTCCGCCGTAACGGATCTGAATCTCGTCCACGTTGGCGGACGAGAGAAGCCTCTCCCGCCGAAGCCGCTAACGATCTCCGACCTATCGCCGGCACCGATGCACGGCTCGCAGCTGCGCGTGGCGTACCAGGGCGTCCCCGGAGCATACTCCGAGGCCGCCGCCGGCAAAGCCTATCCTAACGGAGAAGCCATACCTTGCGATCAATTCGAGGTCGCGTTCCAAGCCGTTGAACTCTGGATCGCCGATCGCGCTGTTCTCCCTGTAGAAAACTCCCTCGGCGGCTCGATTCACCGGAACTACGACCTCCTCCTCCGCCACCGCCTCCACATCGTCGGCGAGGTCCAGCTCCCCGTCCACCACTGCCTCCTCGCTCTCCCCGGCGTCAGATCCGAGTACCTTACGCGCGTGATCTCTCACCCTCAGGCACTCGCGCAGTGCGAGCACACTCTCACCAAGCTCGGCCTCAACGTCGCTCGCGAGGCCGTCGACGACACAGCCGGCGCCGCCGAGTTCGTCGCCGCAAACAACCTCCGCGACACGGCGGCGATCGCCAGCGCACGCGCGGCGGAGCTCTACGGCCTCCAGATCCTCGCTGATGGGATCCAGGACGACCCGAATAACGTGACTCGGTTCGTTATGTTGGCACGTGAGCCCATTATTCCGCGCACGGATCGGCCTTTTAAGACGAGTATTGTGTTCGCTCACGATAAGGGCACTTCCGTGCTTTTCAAGGTGCTCTCGGCGTTCGCGTTTCGGAACATCAGTTTGACGAAGATTGAGTCGAGGCCGCATCGTAACCGTCCGATTCGGGTTGTTGATGATGAGAGTGAAGGGACCGCGAAGCACTTTGAGTACATGTTTTATGTGGATTTTGAGGCCTCTATGGCTGAGGTTAGGGCGCAGAATGCACTTGCGGAGGTTCAGGAGTTCACGTCGTTCTTGAGGGTTTTGGGGAGTTACCCTATGGATATGACGCCGTGGAGTCCCTCTGCTTCTAGTCACCGGGAAGATTAG 1278 0.6041 MHTLSPPYSNTLGHAIRARDPSLYTRVARTQITVKCGYGFESASFSQQGFGCTRSDWQSACAILSSKVVSQQEDSPPAAGGASVNGHNSAVTDLNLVHVGGREKPLPPKPLTISDLSPAPMHGSQLRVAYQGVPGAYSEAAAGKAYPNGEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRSEYLTRVISHPQALAQCEHTLTKLGLNVAREAVDDTAGAAEFVAANNLRDTAAIASARAAELYGLQILADGIQDDPNNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRVVDDESEGTAKHFEYMFYVDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWSPSASSHRED* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2417 425 ProSiteProfiles ACT domain profile. 318 409 IPR002912 -
Dod03g2417 425 CDD ACT_CM-PDT 316 409 - -
Dod03g2417 425 SUPERFAMILY ACT-like 299 411 IPR045865 -
Dod03g2417 425 Gene3D - 122 210 - -
Dod03g2417 425 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 27 419 - -
Dod03g2417 425 Gene3D - 311 412 - -
Dod03g2417 425 SUPERFAMILY Periplasmic binding protein-like II 127 310 - -
Dod03g2417 425 ProSitePatterns Prephenate dehydratase signature 1. 280 302 IPR018528 GO:0004664|GO:0009094
Dod03g2417 425 CDD PBP2_Ct-PDT_like 127 306 - -
Dod03g2417 425 Gene3D - 211 292 - -
Dod03g2417 425 Pfam Prephenate dehydratase 128 306 IPR001086 GO:0004664|GO:0009094
Dod03g2417 425 ProSiteProfiles Prephenate dehydratase domain profile. 127 304 IPR001086 GO:0004664|GO:0009094
Dod03g2417 425 PANTHER AROGENATE DEHYDRATASE 27 419 - -
Dod03g2417 425 ProSitePatterns Prephenate dehydratase signature 2. 344 351 IPR018528 GO:0004664|GO:0009094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2417 Dod-Chr3 55489097 55491900 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2417 K05359 - gmx:100809331 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2417 03 55489097 55491900 Dod03g2417 03 55489097 55491900 ECH
Dod10g1519 10 35852173 35854490 Dod03g2417 03 55489097 55491900 PCT