Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod03g2215 | ATGTCATCGGACGGTCCATATCACAACGAGTTTGATTTTGAGTTCCTGGGCAACACTACAGGGGAACCTTACTCTGTGCAGACCAACTTGTATGTGAATGGAGTTGGTAACAGAGAGCAGAGGCTCGACCTTTGGTTCGACCCCACCAAAGACTTCCACGACTACTCTATCTTTTGGAATCAACGTCAAGTTATATTTCTAGTGGACGAAACACCAATAAGGGTACACACAAACATGGAACACAAGGGAATCGCTTTTCCCAAAGACCAACCAATGGGGGTATACAGCTCTATATGGAATGCTGATGATTGGGCCACACAGGGTGGTCGTGTGAAGACTGATTGGAGCCATGCACCTTTCATTGCAACATACAAGGCCTTTGAGATCAATGCTTGCGAGTGCCCAGTGTCAGTGGCTGCAGTGGATAATGCTAAGAGGTGCAGTAGCAGTGAGGATAAGAAGTATTGGTGGGATGAGCCTACTTTGTCTGAGCTAAGCTTGCACCAAAGCCACCAGCTTATGTGGGTTAGGGCTAAACATATGGTCTATGACTATTGCTCTGACACTGCTAGGTTCCCAGTTATACCTGCAGAGTGTGTCCATCACACTCACCACCACTAG | 621 | 0.4718 | MSSDGPYHNEFDFEFLGNTTGEPYSVQTNLYVNGVGNREQRLDLWFDPTKDFHDYSIFWNQRQVIFLVDETPIRVHTNMEHKGIAFPKDQPMGVYSSIWNADDWATQGGRVKTDWSHAPFIATYKAFEINACECPVSVAAVDNAKRCSSSEDKKYWWDEPTLSELSLHQSHQLMWVRAKHMVYDYCSDTARFPVIPAECVHHTHHH* | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod03g2215 | 206 | PANTHER | XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED | 1 | 203 | IPR044791 | GO:0004553 | |
| Dod03g2215 | 206 | Pfam | Xyloglucan endo-transglycosylase (XET) C-terminus | 152 | 199 | IPR010713 | GO:0005618|GO:0006073|GO:0016762|GO:0048046 | |
| Dod03g2215 | 206 | PANTHER | XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE | 1 | 203 | - | - | |
| Dod03g2215 | 206 | SUPERFAMILY | Concanavalin A-like lectins/glucanases | 1 | 203 | IPR013320 | - | |
| Dod03g2215 | 206 | Pfam | Glycosyl hydrolases family 16 | 3 | 116 | IPR000757 | GO:0004553|GO:0005975 | |
| Dod03g2215 | 206 | Gene3D | - | 1 | 204 | - | - | |
| Dod03g2215 | 206 | ProSiteProfiles | Glycosyl hydrolases family 16 (GH16) domain profile. | 1 | 124 | IPR000757 | GO:0004553|GO:0005975 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dod03g2215 | Dod-Chr3 | 52120510 | 52123205 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod03g2215 | 1 | 204 | Glycoside Hydrolase | AT4G03210 | 72.549 | 8.77e-116 | 328 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod03g2215 | K08235 | - | gmx:100786906 | 407.527 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Dod03g2215 | 03 | 52120510 | 52123205 | Dod10g1336 | 10 | 33505217 | 33507784 | PCT |