Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod02g3072 | ATGGGGAATTCATTTGGGTGCTCAGCATCAGGGGAGAGGCTGGTGTCGGCGGCGAGAGACGGGGACTTGGTGGAGGCGAAGATGCTTCTTGAATGCAACCCTTGTCTTGCTAAGTACTCCACTTTTGGTGGCCTCAATTCCCCTCTTCATTTTGCTGCTTCCAAGGGCCATAACGAGATTGTGGCATTGTTGCTTGAGAATGGAGCTGATGTGAATTCAAGGAACTATTGTGGGCAGACGGCTTTGATGCAAGCTTGTAGATATGGTCATTGGGAGGTTGTACAGACCCTTCTTCTCTTCAGATGCAATGTTATGAGAGCAGATTATCTCAGTGGGAGGACAGCTCTTCACTTTGCAGCTGTGAATGGGCATGTAAGGTGCCTTAGACTCGTTGTGGCTGACTTTGTTCCAAGTGCTCCATATGAAGCTTTACAAGTTCGCACTGATGCTGACATGGGTGATGGATCAAATGTGAAAAGCAAACATGAACAAAGTGCACTGTCCAGGTTTGTAAACAAGATAGCCGATGCTGGTATTACTGCCCTTCATATGGCTGCACTAAATGGCTATTTTGATTGTGTACAACTGCTTCTCAATCTTAATGCGAATGTGTCAGCTGCAACATTTCATTATGGAACAGCAATGGATTTAATAGGGGCTGGAAGTACTCCATTGCATTATGCTGCTTGTGGGGGGAATTTAAAATGTTGTCAGATTCTCCTTGCAAGAGGTGCCAGTCGGACAGCTTTGAATTGCAATGGGTGGCTTCCCCTTGATGTTGCGAGGATGTGGGGGCGACATTGGCTTGAACCATTGCTGGCTCCCACTTCTGATGCTGTAATACCGTCATTTCCTCCTTCAAATTATTTGTCCTTGCCACTCATGAGTGTGCTCAACATAGCCAGAGAGAGTGCATTGCAATCATCTACTACCTCTTCTGATGAAATTGACTTCTGTGCTGTTTGCCTGGAGAGGCCATGTTCAGTGGCTGCAGAAGGATGTCGGCATGAGCTTTGTGTACGATGTGCGCTCTATCTATGTTCAACAAGCAATGTTTCATCTGAAATGCTTGGCCCTCCTGGTTCCATCCCTTGCCCCCTCTGTAGACATGGAATTGTGTCTTTTGTTAAGTTACCAGGTTCCCAAGCAAAAGAAAATAAAGTGAGCGTATCTCTCGGCTTATGTACCCCATGCATGCTTCATCCATGTGACATAGATCGACCATCTCTTTCTCATACACCAGAGATTCGAAAGAATCGTGTAGCTTCTGTTCCTTCCGAGATGCTCTGCCCCGTCACTTGTAGTCCATTTCCATCAGTGGCACTTCCTCTATGTACCTGCAATGATGGTCCTTGTCCATCATTTGAGCCGCGGGAAGAAGAAACACAAGATGGATCGCCTCATCACTCACAAGCATCAACAACGGATCAGGATAAAATGGAAGGGCCAAGACTGGAGAAAACGACATGTTCAAGCATGTTTTGGGGTCGAAGGAGTTGCAGCAGGGAACATCAGTGCAATTCTGAAATTAATGCTTGA | 1539 | 0.4639 | MGNSFGCSASGERLVSAARDGDLVEAKMLLECNPCLAKYSTFGGLNSPLHFAASKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVMRADYLSGRTALHFAAVNGHVRCLRLVVADFVPSAPYEALQVRTDADMGDGSNVKSKHEQSALSRFVNKIADAGITALHMAALNGYFDCVQLLLNLNANVSAATFHYGTAMDLIGAGSTPLHYAACGGNLKCCQILLARGASRTALNCNGWLPLDVARMWGRHWLEPLLAPTSDAVIPSFPPSNYLSLPLMSVLNIARESALQSSTTSSDEIDFCAVCLERPCSVAAEGCRHELCVRCALYLCSTSNVSSEMLGPPGSIPCPLCRHGIVSFVKLPGSQAKENKVSVSLGLCTPCMLHPCDIDRPSLSHTPEIRKNRVASVPSEMLCPVTCSPFPSVALPLCTCNDGPCPSFEPREEETQDGSPHHSQASTTDQDKMEGPRLEKTTCSSMFWGRRSCSREHQCNSEINA* | 513 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod02g3072 | 512 | Coils | Coil | 507 | 512 | - | - | |
| Dod02g3072 | 512 | Pfam | Ankyrin repeats (many copies) | 46 | 98 | IPR002110 | GO:0005515 | |
| Dod02g3072 | 512 | Pfam | Ankyrin repeats (many copies) | 176 | 217 | IPR002110 | GO:0005515 | |
| Dod02g3072 | 512 | Pfam | Ankyrin repeats (many copies) | 220 | 261 | IPR002110 | GO:0005515 | |
| Dod02g3072 | 512 | ProSiteProfiles | Ankyrin repeat profile. | 177 | 209 | IPR002110 | GO:0005515 | |
| Dod02g3072 | 512 | ProSiteProfiles | Ankyrin repeat region circular profile. | 177 | 206 | - | - | |
| Dod02g3072 | 512 | SMART | ANK_2a | 111 | 141 | IPR002110 | GO:0005515 | |
| Dod02g3072 | 512 | SMART | ANK_2a | 44 | 73 | IPR002110 | GO:0005515 | |
| Dod02g3072 | 512 | SMART | ANK_2a | 177 | 206 | IPR002110 | GO:0005515 | |
| Dod02g3072 | 512 | SMART | ANK_2a | 77 | 106 | IPR002110 | GO:0005515 | |
| Dod02g3072 | 512 | SMART | ANK_2a | 220 | 249 | IPR002110 | GO:0005515 | |
| Dod02g3072 | 512 | PANTHER | HOMEOBOX PROTEIN WARIAI | 1 | 512 | - | - | |
| Dod02g3072 | 512 | ProSitePatterns | Zinc finger RING-type signature. | 334 | 343 | IPR017907 | - | |
| Dod02g3072 | 512 | ProSiteProfiles | Ankyrin repeat profile. | 44 | 76 | IPR002110 | GO:0005515 | |
| Dod02g3072 | 512 | Gene3D | - | 221 | 274 | IPR036770 | - | |
| Dod02g3072 | 512 | ProSiteProfiles | Ankyrin repeat profile. | 220 | 252 | IPR002110 | GO:0005515 | |
| Dod02g3072 | 512 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 300 | 390 | IPR013083 | - | |
| Dod02g3072 | 512 | Gene3D | - | 8 | 108 | IPR036770 | - | |
| Dod02g3072 | 512 | Gene3D | - | 109 | 220 | IPR036770 | - | |
| Dod02g3072 | 512 | PRINTS | Ankyrin repeat signature | 193 | 207 | IPR002110 | GO:0005515 | |
| Dod02g3072 | 512 | PRINTS | Ankyrin repeat signature | 112 | 127 | IPR002110 | GO:0005515 | |
| Dod02g3072 | 512 | ProSiteProfiles | Ankyrin repeat profile. | 111 | 132 | IPR002110 | GO:0005515 | |
| Dod02g3072 | 512 | SUPERFAMILY | RING/U-box | 318 | 375 | - | - | |
| Dod02g3072 | 512 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE XBOS32 | 1 | 512 | - | - | |
| Dod02g3072 | 512 | ProSiteProfiles | Ankyrin repeat region circular profile. | 111 | 132 | - | - | |
| Dod02g3072 | 512 | SUPERFAMILY | Ankyrin repeat | 14 | 273 | IPR036770 | - | |
| Dod02g3072 | 512 | ProSiteProfiles | Ankyrin repeat region circular profile. | 220 | 246 | - | - | |
| Dod02g3072 | 512 | ProSiteProfiles | Ankyrin repeat region circular profile. | 44 | 75 | - | - | |
| Dod02g3072 | 512 | MobiDBLite | consensus disorder prediction | 456 | 485 | - | - | |
| Dod02g3072 | 512 | ProSiteProfiles | Zinc finger RING-type profile. | 319 | 369 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dod02g3072 | Dod-Chr2 | 64944361 | 64949573 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod02g3072 | 14 | 325 | Miscellaneous Gene Families | AT2G31820 | 27.673 | 8.27e-14 | 72.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod02g3072 | K19044 | - | gmx:100812809 | 960.288 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Dod02g3072 | 02 | 64944361 | 64949573 | Dod02g3072 | 02 | 64944361 | 64949573 | ECH | |
| Dod02g3072 | 02 | 64944361 | 64949573 | Dod06g0752 | 06 | 9187706 | 9188584 | PCT |