Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3013 ATGTGGTGGTTTGGCAGAAAAGGAGCTTCTGGGTTCTCAGCTTCTTCCACTGCTGAGGAAGTCACTCAGGGAATTGATGCCACTGGCCTCACCGCCATCGTTACAGGGGCCACCAGTGGTATTGGTATTGAAACTGCGCGTGTGCTTGCGTTACGCGGCGTCCATGTAGTCATGGGGATTAGAAACATGGCAGCTGGTGGGGAGGTCAAGGATGCAATATTAAGGTATAACTCCACTGCAAAAATTGATGTGATGGAACTGGACCTAAGTTCAATGGAATCAGTGAGGAAATTTGCATCACAATACAATTCTCGTTGTCTTCCTCTGAATATACTTGTAAATAATGCAGGAATCATGGCAACGCCATTCAAACTTTCCAAAGATAATATAGAATTACAGTTTGCAACAAACCACATAGGTCATTTCCTTTTGACAAACTTATTGTTGGAAACTATGAAAAGGACTGCTATTGAACAGAGGAAAGAGGGAAGGATCGTAAATGTCTCATCAAGACGTCATCAATTGTCATATCCTGAAGGGATTCGATTTGATAAAATCAATGATGAATCAGGGTATAGCAGTATGTCGGCATATGGGCAGTCAAAGCTTGCTAATGTTTTGCATGCTAATGAGCTTGCAAGACGACTAAAGGAGGAAGGCTCGGAGATAACTGCAAACTCGCTTAGCCCCGGAGTAATTGCCACCAATCTTTTCCGTTATCACAGCCTAATTGATGGATTTGTTGGTCTACTTGGCAAATATGTAATGAAAAATATACAGCAGGGCGCGGCAACGACCTGCTATGTCGCTCTGCATCCACAAGTTAAAGGGGTGACTGGCTGCTACTTTGCAGACTGTAACTTATCTGAAGCAAGCTCACAAGCAGCTGATCCAGAGCTGGCAAAGAAACTGTGGGAGTATAGCTCAAATTTGGTTAAAACTTGA 945 0.4349 MWWFGRKGASGFSASSTAEEVTQGIDATGLTAIVTGATSGIGIETARVLALRGVHVVMGIRNMAAGGEVKDAILRYNSTAKIDVMELDLSSMESVRKFASQYNSRCLPLNILVNNAGIMATPFKLSKDNIELQFATNHIGHFLLTNLLLETMKRTAIEQRKEGRIVNVSSRRHQLSYPEGIRFDKINDESGYSSMSAYGQSKLANVLHANELARRLKEEGSEITANSLSPGVIATNLFRYHSLIDGFVGLLGKYVMKNIQQGAATTCYVALHPQVKGVTGCYFADCNLSEASSQAADPELAKKLWEYSSNLVKT* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3013 314 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Dod02g3013 314 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Dod02g3013 314 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Dod02g3013 314 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Dod02g3013 314 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Dod02g3013 314 PANTHER RETINOL DEHYDROGENASE 2 313 - -
Dod02g3013 314 Gene3D - 20 314 - -
Dod02g3013 314 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Dod02g3013 314 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Dod02g3013 314 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Dod02g3013 314 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 290 IPR036291 -
Dod02g3013 314 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 313 - -
Dod02g3013 314 Pfam short chain dehydrogenase 31 178 IPR002347 -
Dod02g3013 314 CDD retinol-DH_like_SDR_c_like 29 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3013 Dod-Chr2 63753892 63757197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3013 31 170 Acyl Lipid Metabolism Gene Families AT1G62610 30.405 4.66e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3013 - - gmx:100775556 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g3013 02 63753892 63757197 Dod06g0813 06 10127382 10132985 ECH
Dod02g3013 02 63753892 63757197 Dod02g3013 02 63753892 63757197 ECH