Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2171 ATGAAGACTCCAACAACGCCACTAGCACTTTATATAAGTGACCCTTCCCATTTCAAATTCCATCTCCAACAATCTGCGTGCTCTTTCTTCTTCAATATTCATCTTATTCTTTCATATTCTTTTGCCATTGTATTTGGTAACACTATACAAATATATCATCGGTTAACTTACGAAATACGAGATTGGATGGACAAGATGGCTCAGTATGCTCGAGTGTTCAACCACTTTGATGAAAACAAAGATGGCAGGATATCACCGACGGAGTTGCGGCAATGCGTCGAGGCGGTCGGCGGCAAGTTGTCTGCGGAGGAGGCTGAGGCAGCGGTGGAGCTTCTGGACTCGGACGGTGATGGGTTGGTGGGGTTGGATGACTTTGTGAGGTTTGTGGAGGGAGGGAAAGAGGAAGAGAAAATGGATGATCTAAGAGAGGCGTTCAAGATGTATGAAATGGAAGGGTGTGGTTGCATCACACCGAAGAGTCTCAAGAGGATGCTTGGAAGATTGGGTGAGAGTAAGAGTACCGATGAGTGTCAAGCTATGATTTCTAGATTCGATCTTGATGGGGATGGGGTGCTCAGTTTCGATGAATTTAGGGTCATGATGCTGTAA 609 0.4548 MKTPTTPLALYISDPSHFKFHLQQSACSFFFNIHLILSYSFAIVFGNTIQIYHRLTYEIRDWMDKMAQYARVFNHFDENKDGRISPTELRQCVEAVGGKLSAEEAEAAVELLDSDGDGLVGLDDFVRFVEGGKEEEKMDDLREAFKMYEMEGCGCITPKSLKRMLGRLGESKSTDECQAMISRFDLDGDGVLSFDEFRVMML* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2171 202 Pfam EF-hand domain pair 154 201 IPR002048 GO:0005509
Dod02g2171 202 ProSitePatterns EF-hand calcium-binding domain. 77 89 IPR018247 -
Dod02g2171 202 Gene3D - 134 202 - -
Dod02g2171 202 ProSiteProfiles EF-hand calcium-binding domain profile. 100 135 IPR002048 GO:0005509
Dod02g2171 202 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 64 202 - -
Dod02g2171 202 Gene3D - 51 133 - -
Dod02g2171 202 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 64 202 - -
Dod02g2171 202 ProSiteProfiles EF-hand calcium-binding domain profile. 172 202 IPR002048 GO:0005509
Dod02g2171 202 ProSitePatterns EF-hand calcium-binding domain. 113 125 IPR018247 -
Dod02g2171 202 Pfam EF-hand domain pair 69 129 IPR002048 GO:0005509
Dod02g2171 202 CDD EFh 71 129 IPR002048 GO:0005509
Dod02g2171 202 ProSiteProfiles EF-hand calcium-binding domain profile. 64 99 IPR002048 GO:0005509
Dod02g2171 202 CDD EFh 140 201 IPR002048 GO:0005509
Dod02g2171 202 ProSiteProfiles EF-hand calcium-binding domain profile. 136 171 IPR002048 GO:0005509
Dod02g2171 202 SMART efh_1 68 96 IPR002048 GO:0005509
Dod02g2171 202 SMART efh_1 176 202 IPR002048 GO:0005509
Dod02g2171 202 SMART efh_1 140 168 IPR002048 GO:0005509
Dod02g2171 202 SMART efh_1 104 132 IPR002048 GO:0005509
Dod02g2171 202 SUPERFAMILY EF-hand 64 201 IPR011992 -
Dod02g2171 202 ProSitePatterns EF-hand calcium-binding domain. 185 197 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2171 Dod-Chr2 45418869 45419770 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2171 64 201 EF-hand Containing Proteins AT1G76650 52.899 9.86e-45 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2171 K13448 - zju:107427847 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1744 01 51003764 51004656 Dod02g2171 02 45418869 45419770 PCT