Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1744 ATGGTCATGGACAAACTAAGGCAATATGAACGTGTGTTCAGTCACTTCGATGAAAACGGAGATGGCAAGATATCGGCATCGGAGCTTCAGCAATGCGTTAAGACTGTCGGCGGGGAGTTGTCGGCGGAGGAGGCGGAGGCGGCAGTGGCGTTTCTGGATGTGGACGGTGATGGGCTGGTGGGATTGGATGATTTTGTGAGGTTTGTGGAAGAAGGAGGAGAGGAAGAGAAGGTGAATGACCTGAGAGAGGCTTTCAAGATGTATGAGATGGATGGGAGTGGCTGCATCACACCAAAGAGTCTTAGGAGGACGCTTAGCAGGTTAGGTGAATCTAGGAGTATAGATGACTGTGTAGTTATGATATCTCGATTTGACCTCGATGGGGATGGGGTGCTCAGTTTTGATGAATTCAGGGTCATGATGCTGTAA 429 0.4942 MVMDKLRQYERVFSHFDENGDGKISASELQQCVKTVGGELSAEEAEAAVAFLDVDGDGLVGLDDFVRFVEEGGEEEKVNDLREAFKMYEMDGSGCITPKSLRRTLSRLGESRSIDDCVVMISRFDLDGDGVLSFDEFRVMML* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1744 142 Gene3D - 72 142 - -
Dod01g1744 142 ProSiteProfiles EF-hand calcium-binding domain profile. 40 75 IPR002048 GO:0005509
Dod01g1744 142 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 4 142 - -
Dod01g1744 142 ProSiteProfiles EF-hand calcium-binding domain profile. 76 111 IPR002048 GO:0005509
Dod01g1744 142 Pfam EF-hand domain pair 9 69 IPR002048 GO:0005509
Dod01g1744 142 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Dod01g1744 142 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Dod01g1744 142 SMART efh_1 44 72 IPR002048 GO:0005509
Dod01g1744 142 SMART efh_1 8 36 IPR002048 GO:0005509
Dod01g1744 142 SMART efh_1 80 108 IPR002048 GO:0005509
Dod01g1744 142 SMART efh_1 116 142 IPR002048 GO:0005509
Dod01g1744 142 CDD EFh 80 141 IPR002048 GO:0005509
Dod01g1744 142 CDD EFh 8 69 IPR002048 GO:0005509
Dod01g1744 142 Gene3D - 2 71 - -
Dod01g1744 142 ProSiteProfiles EF-hand calcium-binding domain profile. 112 142 IPR002048 GO:0005509
Dod01g1744 142 SUPERFAMILY EF-hand 5 141 IPR011992 -
Dod01g1744 142 ProSitePatterns EF-hand calcium-binding domain. 53 65 IPR018247 -
Dod01g1744 142 Pfam EF-hand domain pair 93 141 IPR002048 GO:0005509
Dod01g1744 142 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 4 142 - -
Dod01g1744 142 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1744 Dod-Chr1 51003764 51004656 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1744 4 141 EF-hand Containing Proteins AT1G76640 53.191 4.04e-46 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1744 K13448 - qsu:111991949 204.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1744 01 51003764 51004656 Dod01g1744 01 51003764 51004656 ECH
Dod01g1744 01 51003764 51004656 Dod02g2171 02 45418869 45419770 PCT