Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2156 ATGTCTGTGAACAATAATAACCCTTCTAAGGGTATTGGGGCCTCTTCCTCGTCCTTTGGAAATGCTGCAATGCCCTCCCCTTCTATGCCTGGAAACCCTGGATTCTCACAGTCCCAAGCACAAGCCCAGATTGGTGCTGGCTTTCAAGGCCAGTTTCCACTGTCCCAAGCCCATGCCATTGCCCAAGCACAATCGAAAGCCGCTCAAGTTCATGCGGCCCAAGCCGCAGCTCATGCTCAACTCCAGGCTCATTTGCAGGCTCAGGGGTTGACCCTCAATCAGGGCCAGTCTGGTGGTTTCGGGAATTTGGGGGTGTCTTCGTCGCCGCCGCCGTCGGTTTCTACGCCGGGCAATGCTAGTGGGAAGCGGCTCCCTATGAAACCCCCTATGCGCCCTGTAGGGTTTTCTCCTCAGAACAATTTCTCGCCTTTAAGACCGATGGAACTCACGCCTGCTTCTCGAAGGAAGAAGCAGAAGATCCCTGAGAAGCAGCTTCAAGATAGAGTGGCTGCTATCCTACCGGAGTCTGCTTTGTACACCCAGCTTCTCGAGTTTGAGTCTCGGGTTGATGCTGCCCTTTCTAGGAAGAAGGTTGACATTCAGGAAGCACTGAAAAACCCTCCTTGTATTCAAAAGACACTTCGCATCTATGTATATAACACATATGCTAATCAAATTTGCACGATCCCTAAGAAGCCAAATGCTGAGCCACCCACCTGGACACTGAAGATAGTTGGGAGGATATTGGAAGATGGTGTTGACCCTGATCAGCCAGGGGTTGTGCATAATTCCTCTCCATTGTATCCGAAGTTCTCAGCTTTTTTCAAACGAGTAACCATTTCTTTGGACCAGAGACTCTATCCTGATAATCATATCATTTTGTGGGAGAATTCTCGATCGCCTGCTCCTCATGAAGGTTTTGAAGTAAAGAGGAAAGGGGATAAAGAATTTACAGCGAATGTACGGTTGGAAATGAATTATGTACCTGAGAAGTTTAAGCTTTCACCGGCATTGACTGAAGTTCTTGGTATTGAGGTTGATACCCGCCCAAGAATTATTGCTGCAATCTGGCATTATGTGAAGGCCAGGAAATTGCAAAACCCAAATGACCCTTCTTTCTTTCACTGCGATCAACCACTTCAGAAAGTATTTGGTGAAGAAAAGATGAAGTTTACTATGGTTTCACAGAAAATAGCACCCCATTTAGTCCTCCCACAGCCTATACTTTTGGAGCACAAGATCAAACTCTCAGGAAATAGTCCAGCTGGAACTGCTTGTTATGATGTGACAGTTGATATTCCATTTCCTATTCAAAGGGAGTTGTCTGCATTACTGGCTAACGTGGAGAAGAATAAAGAAATTGAGGCATGTGATGAAGCGATATGCGGAATCATTAGAAAAATCCAAGAGCACAGGAGGAGACGAGCATTCTTTCTTGGTTTCAGTCAATCTCCTGTAGATTTCATTAATGCCATGATCGAATCTCAAAGCAGGGATCTGAAAGTAGTGGCTGGAGAACCTAGTCGCAATCCTGAAAAAGAGCGCAAATCAGATTTCTTCAACCAACCATGCAACTTGAACAGGGTTGAAGATGCTGTTATTCGATATTTGAATCGCAAACCAGCAGCAGGAAGTGATGCTCCAGGAAGCACATAA 1656 0.4607 MSVNNNNPSKGIGASSSSFGNAAMPSPSMPGNPGFSQSQAQAQIGAGFQGQFPLSQAHAIAQAQSKAAQVHAAQAAAHAQLQAHLQAQGLTLNQGQSGGFGNLGVSSSPPPSVSTPGNASGKRLPMKPPMRPVGFSPQNNFSPLRPMELTPASRRKKQKIPEKQLQDRVAAILPESALYTQLLEFESRVDAALSRKKVDIQEALKNPPCIQKTLRIYVYNTYANQICTIPKKPNAEPPTWTLKIVGRILEDGVDPDQPGVVHNSSPLYPKFSAFFKRVTISLDQRLYPDNHIILWENSRSPAPHEGFEVKRKGDKEFTANVRLEMNYVPEKFKLSPALTEVLGIEVDTRPRIIAAIWHYVKARKLQNPNDPSFFHCDQPLQKVFGEEKMKFTMVSQKIAPHLVLPQPILLEHKIKLSGNSPAGTACYDVTVDIPFPIQRELSALLANVEKNKEIEACDEAICGIIRKIQEHRRRRAFFLGFSQSPVDFINAMIESQSRDLKVVAGEPSRNPEKERKSDFFNQPCNLNRVEDAVIRYLNRKPAAGSDAPGST* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2156 551 CDD SWIB_like 334 402 - -
Dod02g2156 551 PANTHER SWIB/MDM2 DOMAIN-CONTAINING PROTEIN-RELATED 96 543 - -
Dod02g2156 551 MobiDBLite consensus disorder prediction 100 147 - -
Dod02g2156 551 MobiDBLite consensus disorder prediction 1 47 - -
Dod02g2156 551 SUPERFAMILY SWIB/MDM2 domain 323 412 IPR036885 -
Dod02g2156 551 MobiDBLite consensus disorder prediction 100 119 - -
Dod02g2156 551 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 96 543 - -
Dod02g2156 551 ProSiteProfiles SWIB/MDM2 domain profile. 327 404 IPR003121 -
Dod02g2156 551 Gene3D SWIB/MDM2 domain 324 408 IPR036885 -
Dod02g2156 551 SMART swib_2 328 407 IPR019835 -
Dod02g2156 551 Pfam SWIB/MDM2 domain 331 402 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2156 Dod-Chr2 44670954 44673514 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Dod02g2156 SWIB 8.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2156 K11650 - gmx:100776562 917.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1764 01 51422292 51425502 Dod02g2156 02 44670954 44673514 PCT