Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1051 ATGGTTTTAGAGGCATCACAGAATCTGCGTTTGGTACCTGAAGGGCTCACGCTGATTTCGTTTTCAGTAATAATGTTATGTGTTACAGTCGAGAACAATATGGAAGCATTGGAGGCTCATGATGGTGCCAGTAAAGGGAAATATACCATTGGACTTGGACAAGACTGCATGGCATTCTGTACTGAGGTTGAAGATGTCATCTCCATGAGTTTGACAGTAGTCACTTCCCTTCTTGAGAAGTATGGGATTGATCCTAAACAAATTGGTCGCCTGGAAGTAGGCAGCGAGACTGTGATAGACAAAAGCAAATCCATCAAGACATTTCTGATGCAGATCTTCGAGAAATATGGAAATACTGACATTGAGGGTGTTGATTCAACTAATGCTTGCTATGGAGGAACTGCTGCTTTGTTCAATTGTGTCAACTGGGTGGAGAGCAATTCATGGGATGGGCGCTATGGACTCGTTGTCTGCACTGACAGTGCTGTCTATGCTGAAGGACCTGCTCGGCCTACTGGAGGAGCTGCTGCTATCGCCATGTTAATTGGTCCAGACGCTCCCATTGCATTTGAAAGCAAATTGAGGGCAAGCCACATGTCTCATGCTTACGATTTTTACAAGCCTAATCTTGCGAGCGAATATCCAGTTGTCGATGGGAAACTTTCTCAAACTTGTTATCTAATGGCTGTTGATTCTTGCTACCAACAACTCAGTCACAAATATGAGAAGCTCCAGGGCAAACCCTTTTCTCTTTCTGATGCTGAATACTTTGTATTTCACTCTCCTTATAACAAGCTTGTACAGAAAAGTTTTGCTCGTTTGTTGTTCAATGACTTCCTGAGGAATCCCAGTTCCGCGGATGAAGCTACCAAAGAAAAGCTGGAACCTTTTGCAACTTTATCTGGTGATGAGAGCTATCAAAGCAGGGATCTTGAAAAGGCATCCCAGCAAGTTGCAAAGCCTCTATATGATGCCAAGGTGCAACCAACTACTCTGATGCCAAAGCAAGTTGGCAACATGTATACTGCATCTCTTTATGCAGCATTTGCATCCCTTATTCACAACAGGCATAGCACACTGGCAGGTCAGAGGGTGATACTATTTTCATACGGGAGTGGCCTAACTGCCACAATGTTTTCTTTGCAATTACGTGATGGTCAGCATCCATTTAGCTTGTCAAACATTGCTGAAGTAATGGATGTTGCTGGAAAATTGAAGTCAAGGCATGAGTTTCCTCCAGAGAAGTTTGTTGAGACCCTGCAGCTAATGGAACATAGATATGGTGCCAAGGATTTTGTGACAAGCAAGGATAGTAGCCTTTTATCTCCAGGCACATTCTATCTCACTGAAGTTGACTCCTTGTATCGTAGATTCTATGCAAAGAAGACTAGCGAAAATGGTTCCACTCCCACAGATAACGGTGTGATTGCGAATGGTCACTAA 1443 0.4345 MVLEASQNLRLVPEGLTLISFSVIMLCVTVENNMEALEAHDGASKGKYTIGLGQDCMAFCTEVEDVISMSLTVVTSLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPIAFESKLRASHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMAVDSCYQQLSHKYEKLQGKPFSLSDAEYFVFHSPYNKLVQKSFARLLFNDFLRNPSSADEATKEKLEPFATLSGDESYQSRDLEKASQQVAKPLYDAKVQPTTLMPKQVGNMYTASLYAAFASLIHNRHSTLAGQRVILFSYGSGLTATMFSLQLRDGQHPFSLSNIAEVMDVAGKLKSRHEFPPEKFVETLQLMEHRYGAKDFVTSKDSSLLSPGTFYLTEVDSLYRRFYAKKTSENGSTPTDNGVIANGH* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1051 480 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 33 187 IPR013528 -
Dod02g1051 480 CDD init_cond_enzymes 15 381 - -
Dod02g1051 480 SUPERFAMILY Thiolase-like 33 185 IPR016039 GO:0016746
Dod02g1051 480 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 188 462 IPR013746 GO:0004421|GO:0006084|GO:0010142
Dod02g1051 480 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 118 133 IPR000590 GO:0004421|GO:0008299
Dod02g1051 480 SUPERFAMILY Thiolase-like 188 460 IPR016039 GO:0016746
Dod02g1051 480 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 21 462 IPR010122 GO:0004421|GO:0008299
Dod02g1051 480 Gene3D - 26 464 IPR016039 GO:0016746
Dod02g1051 480 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 33 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1051 Dod-Chr2 13134167 13139448 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1051 K01641 - gmx:100782595 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1051 02 13134167 13139448 Dod02g1051 02 13134167 13139448 ECH
Dod05g1468 05 39383352 39388926 Dod02g1051 02 13134167 13139448 PCT