Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0446 ATGGCTCTGTTCCCACACCACCGACATTCTTCTCATACGTTCTTGGGTTTCTTCCTCTTCCTCGTTTTCAAAGGGGTTTCAGGCGCCACATTCACGTTCGTGAACAAGTGCAATTACACAGTGTGGCCAGGGATTTTGGGAAAACCAGAACTCGGAAGCACAGGATTCGAACTCCAGAAAGGAAGCTCAAAGAGCTTCCAAGCTGCAACGGGTTGGTCTGGAAGATTCTGGGGCAGAACAGGGTGCAAATTCGACGGTTCCGGCAACGGAACATGCGCCACCGCCGACTGCGGCTCCGGCGAGATCGCCTGCAACGGCGCCGGAGCATCCCCTCCGGCCACCCTCGCCGAGTTCACCCTCGGCACCGGCTCCATGGACTACTACGACGTCAGCCTCGTCGACGGTTACAACCTCCCCATGTTGGTGGAGGCCTCCGGCGGCTCCGGCTCCTGCTCCGCCACCGGATGCGGCGAGGACCTCAACCGCCGGTGCCCGTCGGAGCTCCGGGTCGACGGCGGTGATGCCTGTAGGAGCGCCTGTGAGGCTTTTGGTAAGCCGGAGTATTGCTGCAACGGGGATTTCAGTAACCCTTCCACGTGTAAGCCATCCTTGTACTCGCAAATTTTCAAGTCTGCGTGTCCTAAATCTTACAGCTATGCTTACGATGATGCCACTAGCACGTTCACTTGTTCCGGAGCTGACTACAAAATCACATTTTGTCCTTCTTCACCAAGTCTAAAGTCTTCAACGGATTCGGCTCCAAAGGCAACGAATTCGGGTTCGGGGTCTGGGTCGGGTTCATCATCGGTTGAGCAGACTGCATTAGGTTCCACATCGTGGCTAGCTGATATGGCTACGGCTACGGGGTCCTCAACAAGAAGCAAGGCTTTGGGTGGTTCAAGGGCTTTACTATTTTTCGTGGCTGTTACTTTCATTCTTTCTCCTTTGATCGTTTAG 957 0.5496 MALFPHHRHSSHTFLGFFLFLVFKGVSGATFTFVNKCNYTVWPGILGKPELGSTGFELQKGSSKSFQAATGWSGRFWGRTGCKFDGSGNGTCATADCGSGEIACNGAGASPPATLAEFTLGTGSMDYYDVSLVDGYNLPMLVEASGGSGSCSATGCGEDLNRRCPSELRVDGGDACRSACEAFGKPEYCCNGDFSNPSTCKPSLYSQIFKSACPKSYSYAYDDATSTFTCSGADYKITFCPSSPSLKSSTDSAPKATNSGSGSGSGSSSVEQTALGSTSWLADMATATGSSTRSKALGGSRALLFFVAVTFILSPLIV* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0446 318 Pfam Thaumatin family 35 241 IPR001938 -
Dod02g0446 318 ProSitePatterns Thaumatin family signature. 88 104 IPR017949 -
Dod02g0446 318 SMART tha2 31 241 IPR001938 -
Dod02g0446 318 MobiDBLite consensus disorder prediction 245 271 - -
Dod02g0446 318 CDD TLP-PA 30 240 - -
Dod02g0446 318 ProSiteProfiles Thaumatin family profile. 28 241 IPR001938 -
Dod02g0446 318 Gene3D Thaumatin 29 241 IPR037176 -
Dod02g0446 318 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 9 266 - -
Dod02g0446 318 PANTHER OS03G0233200 PROTEIN 9 266 IPR001938 -
Dod02g0446 318 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Dod02g0446 318 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Dod02g0446 318 PRINTS Pathogenesis-related protein signature 54 63 IPR001938 -
Dod02g0446 318 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Dod02g0446 318 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Dod02g0446 318 PRINTS Pathogenesis-related protein signature 231 240 IPR001938 -
Dod02g0446 318 SUPERFAMILY Osmotin, thaumatin-like protein 29 242 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0446 Dod-Chr2 5886652 5888985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0446 16 265 Receptor kinase-like Gene Family AT5G38280 46.863 2.61e-73 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0446 - - gmx:100802906 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0446 02 5886652 5888985 Dod02g0446 02 5886652 5888985 ECH
Dod02g0446 02 5886652 5888985 Dod08g2284 08 50883126 50887270 ECH