Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3662 ATGAACCAGGAAATGAATGGGGTAGAGGCCGAGAGGACGAGGGAGAATGTGCATGAGAAAATAGATTATGTGTTTAAGGTGGTGGTGATCGGGGACTCAGCAGTAGGCAAGACTCAAATTCTGTCTAGGTTTGCAAAGAATGAGTTCTGCTATGACTCAAAGTCCACCATTGGAGTTGAGTTCCAGACTAGGACTGTCACAATCAATGGCAAAGTCATCAAGGCCCAGATCTGGGATACTGCTGGCCAAGAAAGGTACAGAGCAGTGACAAGTGCATACTACAGAGGAGCATTAGGGGCGATGGTGGTGTACGACATAACAAAGAGGCAGTCGTTTGATCACGTGGCGAGGTGGATTGAGGAGCTGCGAGCACACGCGGACAGCTCCATCGTGATAACGCTAATAGGGAACAAGGGTGACCTTGTGGACCGGAGAGCGGTGCCCGCGGAGGATGCGGTGGAGTTTGCGGAGGATCAGGGCCTCTTCTTCTCTGAGACTTCAGCTCTAAATGGTGAGAATGTGGAGAGTGCCTTCTTCAAACTGCTGGAAGAGATCAACAGGGTTGTCTCTAAGAAGTCACTGGAGTGTGGTGCTGCTCACGGGAAGCCCAATGGCCTCAACAACAACAACAACAACAACGCTGCCTCTTTTAAAGGATCCAAGATTGATGTTCTCTCGGGCCCTGAATTCGAAATTACTGAGATAAAGAAATTGTCTTCCTGCTCTTGTTGA 732 0.4932 MNQEMNGVEAERTRENVHEKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCYDSKSTIGVEFQTRTVTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMVVYDITKRQSFDHVARWIEELRAHADSSIVITLIGNKGDLVDRRAVPAEDAVEFAEDQGLFFSETSALNGENVESAFFKLLEEINRVVSKKSLECGAAHGKPNGLNNNNNNNAASFKGSKIDVLSGPEFEITEIKKLSSCSC* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3662 243 PANTHER - 1 243 - -
Dod01g3662 243 CDD Rab11_like 22 185 - -
Dod01g3662 243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 191 IPR027417 -
Dod01g3662 243 SMART rho_sub_3 27 191 IPR001806 GO:0003924|GO:0005525
Dod01g3662 243 ProSiteProfiles small GTPase Rab1 family profile. 20 241 - -
Dod01g3662 243 Gene3D - 17 220 IPR027417 -
Dod01g3662 243 ProSiteProfiles small GTPase Ras family profile. 19 226 IPR001806 GO:0003924|GO:0005525
Dod01g3662 243 TIGRFAM small_GTP: small GTP-binding protein domain 24 178 IPR005225 GO:0005525
Dod01g3662 243 PRINTS Transforming protein P21 ras signature 163 185 - -
Dod01g3662 243 PRINTS Transforming protein P21 ras signature 25 46 - -
Dod01g3662 243 PRINTS Transforming protein P21 ras signature 66 88 - -
Dod01g3662 243 PRINTS Transforming protein P21 ras signature 48 64 - -
Dod01g3662 243 PRINTS Transforming protein P21 ras signature 128 141 - -
Dod01g3662 243 ProSiteProfiles small GTPase Rho family profile. 18 189 - -
Dod01g3662 243 PANTHER RAS-RELATED PROTEIN RABA3 1 243 - -
Dod01g3662 243 SMART rab_sub_5 25 188 - -
Dod01g3662 243 Pfam Ras family 26 186 IPR001806 GO:0003924|GO:0005525
Dod01g3662 243 SMART ras_sub_4 22 188 - -
Dod01g3662 243 SMART ran_sub_2 30 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3662 Dod-Chr1 78006521 78008047 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3662 K07904 - gmx:100787725 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3662 01 78006521 78008047 Dod07g2094 07 52073782 52075691 PCT