Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3398 ATGGCTTCCATCCTCCATTTTCTGGTCCTCTATCTATCTAGCTCTCTCCTCTTTTTCCTATCCGAGTCACAAACAGAATCCTTGTCTCGATCACGTGATCCCGGGCGTCCATCCCGCGGCTCCCCTTCTTACAACAACAGAAAACCAAACCTGCTTGTTCTACCCGTACAACACGATGCCGCCACTGGGCTTCCATGGGCCTATGTCCACAAGAGAACCCCTCTATTGCAAGTCCCGGTGCTATTAGACCTCAACGGGAACCACTTGTGGATCAACTGCGAGCAACACTACCAGTCCTCAACCTACCAAGCACCCTTCTGCCACTCCACCCAGTGCTCCCGGGCCAACAGCCACACGTGCCACACCTGCGTCTCCTCATCCAGGCCCGGCTGCCACAACAACACCTGCGAGCTCCTGTCCTCCAACCCGGTCACCCAACAAACCGCCACGGGCGAGCTGGCCCAAGATGTGCTCGCCCTCCTCGCCACTCGCGGGTCCAGGCTGGGCCCAATGGTCACAGTCCCACAATTCCTCTTCTCCTGCGCACCTTCCTTGCTGGTCCAGAAGGGCCTGCCCAACAAAGCTCAAGGTGTTGCTGGGCTGGGGCATGGGCCCATTTCCCTACCAAACCAACTCGCCTCGCACTTCGGGTTCCAACACCAATTCACCATGTGCCTACCTCGCAACCCAACTTCGAACGGGGCTATAATATTCGATGACGCACAAAACAACCTCAACCTGCGCAGAAACAACAACAACCGTAAGAACATCGATATTTTCCGTGATTTGGCGTATACCCCGTTGGCTATTAGCCCACAAGGAGAGTACTTTATCGTACTCTCTGCCGTAAGAGTTAACCAGCATTCCGTGTACCCAGTAACCCCATCGTCAACATCATCGTATGCCCTAGGGGGTGTCGGAGACACGTTGATAAGCACAACAAGCCCTTACATGGTGCTGCACCGCAGCATTTTCGAGACGTTGAAACAAGCTTTTGCTAGCCAGATGCCAAGGCAGGCGCAGGTGAAAGCGGTGGCGCCATTCGGCCTGTGTTTCGACTCGAAGAAGGTGAGTTCGGGTTCAACTCCAAGCGTGGAGCTTGTGATGGAGCAGAACCCAGAGGTTGTGTGGAGGATCACTGGGGAGAACTTGATGGTGCAGGCAGGGCGAGGGGTGACGTGCTTGGGGATTGTGGACGGAGGGTTGCGTCCTAAAGCAGCGATTGCCATAGGGGCGCGCCAATTGGAAGAGAACGTTGTGGTGTTCGACCTTGCCAGGTCGAGGCTCGGGTTTAGCACCACTTCACTGCAATCGCGCGGGAACAAGTGTGGTGATCTCTTTGACTTCACCATTGCTGATCAACAACCATAG 1371 0.5522 MASILHFLVLYLSSSLLFFLSESQTESLSRSRDPGRPSRGSPSYNNRKPNLLVLPVQHDAATGLPWAYVHKRTPLLQVPVLLDLNGNHLWINCEQHYQSSTYQAPFCHSTQCSRANSHTCHTCVSSSRPGCHNNTCELLSSNPVTQQTATGELAQDVLALLATRGSRLGPMVTVPQFLFSCAPSLLVQKGLPNKAQGVAGLGHGPISLPNQLASHFGFQHQFTMCLPRNPTSNGAIIFDDAQNNLNLRRNNNNRKNIDIFRDLAYTPLAISPQGEYFIVLSAVRVNQHSVYPVTPSSTSSYALGGVGDTLISTTSPYMVLHRSIFETLKQAFASQMPRQAQVKAVAPFGLCFDSKKVSSGSTPSVELVMEQNPEVVWRITGENLMVQAGRGVTCLGIVDGGLRPKAAIAIGARQLEENVVVFDLARSRLGFSTTSLQSRGNKCGDLFDFTIADQQP* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3398 456 Pfam Xylanase inhibitor C-terminal 275 432 IPR032799 -
Dod01g3398 456 PANTHER ASPARTYL PROTEASE-RELATED 10 449 IPR001461 GO:0004190|GO:0006508
Dod01g3398 456 MobiDBLite consensus disorder prediction 28 49 - -
Dod01g3398 456 Gene3D Acid Proteases 246 451 IPR021109 -
Dod01g3398 456 Gene3D Acid Proteases 44 240 IPR021109 -
Dod01g3398 456 CDD xylanase_inhibitor_I_like 70 434 IPR033868 -
Dod01g3398 456 ProSiteProfiles Peptidase family A1 domain profile. 65 432 IPR033121 -
Dod01g3398 456 PANTHER BASIC 7S GLOBULIN 10 449 - -
Dod01g3398 456 SUPERFAMILY Acid proteases 57 435 IPR021109 -
Dod01g3398 456 Pfam Xylanase inhibitor N-terminal 69 238 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3398 Dod-Chr1 75147684 75149576 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3398 - - gmx:547485 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2399 01 62711348 62712127 Dod01g3398 01 75147684 75149576 ECH
Dod07g0533 07 7079470 7084369 Dod01g3398 01 75147684 75149576 ECH
Dod01g3398 01 75147684 75149576 Dod01g3398 01 75147684 75149576 ECH