Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3255 ATGAAGCTCCAAGGCTCGCTGCTACTGGTGACTCTTGCTTTGGTGCTAGCCACCACCACTACTGCATCAGATCCTGATCCTCTTCAAGACCTCTGTGTTGCAGACCTTACCTCCGCTGTTAAAGTGAATGGATTCACCTGCAAAGACGCTACGAAGGTAGATGCATCTGATTTCTCCTCAGCAATACTAGCCAAACCAGGTTCCACAAACACCACTTTTGGGTCCATAGTGACAGGAGCCAATGTTCAGAAAATACCAGGACTTAACACACTTGGTGTGTCGTTGGCACGCATTGACTACGCCCCAGGTGGCCTAAACCCACCTCACACACACCCACGTGCCACAGAGGTTGTGTTTGTGCTTGAGGGGCAACTTGATGTAGGGTTCATAACCACAGCCAATGTGCTAATATCAAAGACCATCACAAAGGGTGAGATATTTGTGTTCCCGAAAGGGTTGGTTCACTTCCAAAAGAACAATGCAAACGAGCCTGCTTCAGTGATTTCAGCCTTCAATAGCCAATTGCCTGGCACACAGTCCATTCCTCTCACTTTGTTTGCTGCCACACCACCTGTTCCAGACAATGTGTTGACCAAGGCATTCCAGGTTGGTACCAAAGAGATTGAGAAAATCAAGTCTAGGCTTGCACCCAAGTAG 657 0.4825 MKLQGSLLLVTLALVLATTTTASDPDPLQDLCVADLTSAVKVNGFTCKDATKVDASDFSSAILAKPGSTNTTFGSIVTGANVQKIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEVVFVLEGQLDVGFITTANVLISKTITKGEIFVFPKGLVHFQKNNANEPASVISAFNSQLPGTQSIPLTLFAATPPVPDNVLTKAFQVGTKEIEKIKSRLAPK* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3255 218 PRINTS Germin signature 109 129 IPR001929 GO:0030145
Dod01g3255 218 PRINTS Germin signature 139 159 IPR001929 GO:0030145
Dod01g3255 218 PRINTS Germin signature 172 187 IPR001929 GO:0030145
Dod01g3255 218 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 9 216 - -
Dod01g3255 218 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 4 9 216 - -
Dod01g3255 218 SMART Cupin_1_3 60 209 IPR006045 -
Dod01g3255 218 CDD cupin_OxOx 24 215 - -
Dod01g3255 218 Pfam Cupin 63 208 IPR006045 -
Dod01g3255 218 Gene3D Jelly Rolls 23 217 IPR014710 -
Dod01g3255 218 SUPERFAMILY RmlC-like cupins 24 214 IPR011051 -
Dod01g3255 218 ProSitePatterns Germin family signature. 104 117 IPR019780 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3255 Dod-Chr1 73584590 73587087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3255 8 218 Miscellaneous Gene Families AT3G05930 56.604 2.88e-83 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3255 - - gmx:100302722 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3255 01 73584590 73587087 Dod06g1901 06 27755651 27758080 PCT