Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3039 ATGCAGAGAATGGCGCACTCGTTCCCTGAGGAGGTGCTGGAGCACGTGTTCTCGTTCATAGAGTGCGAGAGGGACCGGAACTCAATCTCGCAGGTGTGCAAGTCATGGTACGAGATCGAGCGTGGGTGCAGGAGGAAGGTGTTCGTAGGGAACTGCTACGCCGTGAGCCCTAAGATGGTGATAAAGCGGTTCCCTGACGTGAGATCCATCGCGCTCAAAGGGAAGCCTCACTTCGCGGACTTCAATTTGGTTCCTGAAGGTTGGGGAGGCTATGTCTGCCCTTGGATCGAGGCTATGTCTCGTGATTGTCCGTGGTTGGAGGAGATTAGGCTCAAGAGGATGGTTGTCACCGACGATAGCTTGGAGCTTATAGCAAAATCCTTCAAGAACTTCAAGGTGTTGGTGCTCACTTCGTGCGAGGGTTTCACTACTGGTGGACTTGCCGCCATTGCCGCCAATTGCAGGAATTTGAAGGAGTTAGATTTGCAGGAGAGCGAAGTAGAGGACCTTAGTGGGCATTGGCTAAGCCATTTTCCTGATTCGTACACATCATTAGTTTCACTTAATATCTCTTGCTTAGTCAATGAGGTGAGTTTATCTGCCCTAGAGCGCCTGCTTAGTAGGTCTCCCAACCTGCGGACACTGCGCCTCAATCGTGCTGTGCCCCTTGATAAGCTACCCAACCTACTTGGCCGGTGTCCTCAGCTGGTTGAGTTAGGCACAGGAGTCTACACCACTGAGATGCGACCAGAGGTCTTCTCAAACCTGGCAGCAGCATTTTCTGGGTGCAAGCAATTGAAGAGCTTGTCTGGCTTTTGGGATGTGCTCCCATCCTACCTTCCAGCTGTCTATCCTATCTGCTCCAGGATTACGTCACTGAACTTGAGTTATGCTACTATTCAAAGCTCTGATCTTATCAAGCTTGTCAGTGAATGTCCAAATTTGTTGCGGTTATGGGTGCTGGACTACATTGAAGATGCTGGCCTTGATGTCCTTGCTGCTTCATGCAAGGATCTAAGGGAGTTGAGAGTGTTTCCTTCTGACCCATTTGGATTAGAACCGAACGTTGCGTTGACAGAACAGGGCCTTGTTTCTGTGTCTGAAGGCTGCTCCAAACTCCAGTCAGTTCTGTATTTTTGTCGTCAAATGTCTAATGCAGCGCTAAAAACAATTGCCCAGAACAAGCCTAATTTCACTCGTTTCCGTCTATGTATTATTGAGCCTCGAACTCCCGATTATCTTACCCGTGAACCACTGGATGATGGTTTTGGAGCTATTGTAAAGAATTGCAAGGATCTTAAACGCCTATCCCTTTCTGGTCTTCTCACTGATCGTGTTTTTGAGTATATTGGGACTTATGCGAAGAAACTTGAGATGCTCTCTGTGGCTTTTGCAGGAGATAGTGATTTGGGACTCCATCATGTGCTTTCTGGTTGTGATAATCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACGAGGCCCTTTTGAACAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCTCAGTGAGTTATGGAGCTTGTAAGCTGCTGGGTCAGAAATTGCCCAGACTTAATGTTGAAGTCATAGATGAAAGAGGACCTCCAGATTCAAGGCCAGAGAGTTGTCCTGTTGAGAAGCTCTATATATACAGGACTGTTGCCGGACCAAGGTTGGACATGCCTGGTTTTGTGTGGAAAATGGAAGATGATTCTTCACTAAGACTCGAGTGA 1755 0.4826 MQRMAHSFPEEVLEHVFSFIECERDRNSISQVCKSWYEIERGCRRKVFVGNCYAVSPKMVIKRFPDVRSIALKGKPHFADFNLVPEGWGGYVCPWIEAMSRDCPWLEEIRLKRMVVTDDSLELIAKSFKNFKVLVLTSCEGFTTGGLAAIAANCRNLKELDLQESEVEDLSGHWLSHFPDSYTSLVSLNISCLVNEVSLSALERLLSRSPNLRTLRLNRAVPLDKLPNLLGRCPQLVELGTGVYTTEMRPEVFSNLAAAFSGCKQLKSLSGFWDVLPSYLPAVYPICSRITSLNLSYATIQSSDLIKLVSECPNLLRLWVLDYIEDAGLDVLAASCKDLRELRVFPSDPFGLEPNVALTEQGLVSVSEGCSKLQSVLYFCRQMSNAALKTIAQNKPNFTRFRLCIIEPRTPDYLTREPLDDGFGAIVKNCKDLKRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDEALLNNAAKLETMRSLWMSSCSVSYGACKLLGQKLPRLNVEVIDERGPPDSRPESCPVEKLYIYRTVAGPRLDMPGFVWKMEDDSSLRLE* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3039 584 Pfam F-box 7 45 IPR041567 -
Dod01g3039 584 SUPERFAMILY F-box domain 6 39 IPR036047 GO:0005515
Dod01g3039 584 Pfam Transport inhibitor response 1 protein domain 65 111 IPR041101 -
Dod01g3039 584 SMART fbox_2 8 49 IPR001810 GO:0005515
Dod01g3039 584 SMART LRR_CC_2 128 153 IPR006553 -
Dod01g3039 584 SMART LRR_CC_2 430 453 IPR006553 -
Dod01g3039 584 SMART LRR_CC_2 370 394 IPR006553 -
Dod01g3039 584 SMART LRR_CC_2 287 311 IPR006553 -
Dod01g3039 584 SMART LRR_CC_2 479 503 IPR006553 -
Dod01g3039 584 SMART LRR_CC_2 103 127 IPR006553 -
Dod01g3039 584 Gene3D - 1 44 - -
Dod01g3039 584 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 5 575 - -
Dod01g3039 584 SUPERFAMILY RNI-like 68 533 - -
Dod01g3039 584 Gene3D Ribonuclease Inhibitor 45 575 IPR032675 -
Dod01g3039 584 PANTHER PROTEIN TRANSPORT INHIBITOR RESPONSE 1 5 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3039 Dod-Chr1 71112376 71116371 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3039 K14485 - gmx:100816241 1059.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3039 01 71112376 71116371 Dod07g0470 07 6226621 6231045 PCT