Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3028 ATGACGGGGGCAGTGATGGTGAGCAAGGGCGGTGGATGCGGTGGTGGCGGTGGTAGAAGCGGAAGGAGGGCGTCTGCGAGAGCCGCAGAAGAAGATGATCAGAACCAGGTGTCTCCGGTGGCGGTTCTGTTGGCGGCTCTCAGGAAATCAATGGTGGCTTGCAGCGTGGACAGCCCCAAAGATGTCATCTCCACCGTTCATCCAATGGAGATTGGATGGCCTACCAACGTTCAGCACGTGAGCCACGTGACCTTCGATCGCTTCAATGGCTTCCTTGGTCTTCCCGTTGAGTTGGAGGTCCATGTTCCCGCTCCGGTTCCCAGTGCTAGCGTTAGTGTATTTGGTGTCTCAGCAGAATCAATGCAGTGTTCTTATGACTCAAAAGGAAACAGTGTCCCCACTATTCTCTTGCTAATGCAGGAGCGGCTTTACTCACAAGGAGGCCTTAAGGCGGAAGGTATATTCCGGATAAACCCAGAAAACAGTGAAGAGGAGAACTTGAGGGACCAACTGAATAGGGGCATTGTGTCAGATGACATTGATGTGCATTGCTTGGCAGGACTAATCAAAGCATGGTTCCGAGAGCTTCCTTCAGGAGTGCTTGATGGACTTTCCCCAGAGCAAGTTCTTCAGTGCAACACAGAAGAAGAATCTGTTGAGCTTGTGAAGCAGCTAAAGCCAACTGAGTCAGCCTTGCTCAACTGGGCCATCGATCTCATGGCTGATGTTGTTGCAGAAGAGGAGTATAACAAAATGGATGCAAGAAATATTGCCATGGTCTTTGCTCCAAATATGACTCAGATGTCTGATCCACTAACTGCTCTGATGCATGCGGTCCAAGTGATGAATTTACTAAAGACCTTGATCCTGAAGACACTTAGAGAGCGCGACGAAACATCAACAGGAGGATATTCACCCATGTCAGTTCATTCATCAGATTGCCAATCTGAGGATGAATATGGCAGTCAGCAAGAAATGGATACCAGCGGCGAACTGAGAGGGACGAAATCAGATTATGATGACCATGATGATGCTCACTGCAGCCATAGCGGTGAAGAGGAAGGGGAGGCTGAATCTTTAAGCGATATAGAGGAATGGTTCTTGAAGAGTTTGGATGAGAACACAGAAGAATGCTCAGAAGAACCTGCAGGCTGTTTGCAAGAGGAATCTGCTAGCCCCAAAAGCTGCTCAGGCTATAAGGTGGAATCTGCTATATCATCTACTGGTATCAAAACTGAGAATTCCTGCCCGAGTAGTTCCTCTCATGGCGATGAGACGAGTACAATGCTGACCGAAATGGGATCAAATGTTGACGCAAGTAGTCCATCAACAGCAAGTACAGGCACCAGTGATGTGGAGATAGTAGATAAATTTACAGATTCTGTTTCACTGGTGCCACTGTTTTCATCTAGTTAA 1416 0.4816 MTGAVMVSKGGGCGGGGGRSGRRASARAAEEDDQNQVSPVAVLLAALRKSMVACSVDSPKDVISTVHPMEIGWPTNVQHVSHVTFDRFNGFLGLPVELEVHVPAPVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSEEENLRDQLNRGIVSDDIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLQCNTEEESVELVKQLKPTESALLNWAIDLMADVVAEEEYNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLRERDETSTGGYSPMSVHSSDCQSEDEYGSQQEMDTSGELRGTKSDYDDHDDAHCSHSGEEEGEAESLSDIEEWFLKSLDENTEECSEEPAGCLQEESASPKSCSGYKVESAISSTGIKTENSCPSSSSHGDETSTMLTEMGSNVDASSPSTASTGTSDVEIVDKFTDSVSLVPLFSSS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3028 471 SMART PBD_5 71 105 IPR000095 -
Dod01g3028 471 MobiDBLite consensus disorder prediction 390 450 - -
Dod01g3028 471 ProSiteProfiles Rho GTPase-activating proteins domain profile. 116 297 IPR000198 GO:0007165
Dod01g3028 471 Pfam RhoGAP domain 133 267 IPR000198 GO:0007165
Dod01g3028 471 Pfam P21-Rho-binding domain 70 98 IPR000095 -
Dod01g3028 471 MobiDBLite consensus disorder prediction 331 360 - -
Dod01g3028 471 MobiDBLite consensus disorder prediction 296 360 - -
Dod01g3028 471 SUPERFAMILY GTPase activation domain, GAP 112 290 IPR008936 GO:0007165
Dod01g3028 471 Gene3D CRIB domain 66 102 IPR036936 -
Dod01g3028 471 Gene3D Rho GTPase activation protein 103 295 IPR008936 GO:0007165
Dod01g3028 471 SMART RhoGAP_3 130 293 IPR000198 GO:0007165
Dod01g3028 471 MobiDBLite consensus disorder prediction 299 330 - -
Dod01g3028 471 CDD RhoGAP 133 283 - -
Dod01g3028 471 PANTHER MKIAA1688 PROTEIN 1 464 IPR044785 GO:0005096
Dod01g3028 471 ProSiteProfiles CRIB domain profile. 71 84 IPR000095 -
Dod01g3028 471 MobiDBLite consensus disorder prediction 1 32 - -
Dod01g3028 471 CDD CRIB 69 99 - -
Dod01g3028 471 MobiDBLite consensus disorder prediction 378 450 - -
Dod01g3028 471 PANTHER RHO GTPASE ACTIVATION PROTEIN-RELATED 1 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3028 Dod-Chr1 71012410 71015410 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3028 - K20642 gmx:100812700 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3028 01 71012410 71015410 Dod01g3028 01 71012410 71015410 ECH
Dod01g3028 01 71012410 71015410 Dod07g0482 07 6363486 6367475 PCT